Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00021 ATGTTGAAGGAGTTGTCGTTCAATCAGCAGACTCAGGAAGAAAACATGTCGAATTTGACTTCAGCATCTGGAGAAGCTAGCGTGTCTTCAGGCAACAGAAACGAGATTGGTTGCCAGTACTTTAGCCAACAACTTCAAACTGATCAACCCACCAAAAAGAAAAGAAGTCTTCCGGGAAACCCAGACCCAGATGCAGAAGTGATAGCTTTATCTCCAAAAACACTGTTGGCAACGAATAGATTCGTCTGTGAGATCTGCAACAAAGGGTTTCAGAGAGATCAGAATCTTCAACTGCACAGAAGAGGGCACAATTTACCATGGAAGCTGAAGCAAAGAACGAGCAAAGAGGTGAAGAAGAAGGTGTACGTCTGCCCAGAATCAAGCTGCGTACACCATGATCCGTCGAGGGCGCTTGGAGACCTCACAGGAATCAAAAAGCATTTCAGCAGAAAACATGGAGAGAAGAGGTGGAAGTGTGACAAGTGTTCCAAGAAATATGCTGTTCAATCGGATTGGAAGGCTCATTCTAAAACCTGTGGCACCAGGGAGTACAGATGCGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATCACTCATCGTGCTTTCTGTGATGCTTTAGCGGAGGAAAATGCCAGAGTCATTACAGCAAATCCACTTCTCTCCTCATCTCATCAGCCACTAGCATCTTCAATGGCTGCTCTTCAAGATCTCCCTCCATTTTCTTTGAAGAAAGAGCAGCAGAGCTTCACTCTTCCGCCATGGTTACCCACTCCATCACCTCTGGACAACGTTTCATCTCCATCCTCAATCTTCTCCCCGAGACTGAACCAAGACTTCACACAGCAAACCCAAAACCCTAACCCTAATCCTGGACCCACTCTCCCTTGCTATCAGTCGGCGGCTTCTTCCCCACACATGTCAGCCACTGCACTGCTGCAGAAGGCAACTCAGATGGGAGCGACCATGAGTGCAAAGACAGATGTATCACAGCCCATACTCAGGACCCACAGCCAGGCTCACGTGTCTGATTCAACCACCAATACAGGCAGTGCTGTCAGAGCCTTTGCCCACAATCCTTTGTCCATACATGGGAATAAAGCTGTTTCTGTTTCAGTTCCTTCTGCCAGTTTTACTGGTGCAGCCCCAAGCGTCCTTCCTAACCCTACTTCGTTTCATGAATTGATGATGACGTCTCTCTCTTCCCCATCTGGTTTTGAAGATTCATCTTTTGAAGAAGCTTTTGGTGGGTTTATGAGCTCGAGAAAAGACGCATCTGCAAAAACAACCGCCGCCACGAACGAAGTAGCCGCCGTCGTTGGTGGGGGTGAAGGTTTGACAAGAGATTTTCTGGGGCTGCGAGCTTTCTCTCACAGTGATATCCTAAACATTGCTGGTTTTAGCAACTGCCTAAACACGTCTCAACCTCATCAGAATCAAACAAAGAGCACATGGCAAGGTTAG 1467 47.38 MLKELSFNQQTQEENMSNLTSASGEASVSSGNRNEIGCQYFSQQLQTDQPTKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFSRKHGEKRWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEENARVITANPLLSSSHQPLASSMAALQDLPPFSLKKEQQSFTLPPWLPTPSPLDNVSSPSSIFSPRLNQDFTQQTQNPNPNPGPTLPCYQSAASSPHMSATALLQKATQMGATMSAKTDVSQPILRTHSQAHVSDSTTNTGSAVRAFAHNPLSIHGNKAVSVSVPSASFTGAAPSVLPNPTSFHELMMTSLSSPSGFEDSSFEEAFGGFMSSRKDASAKTTAATNEVAAVVGGGEGLTRDFLGLRAFSHSDILNIAGFSNCLNTSQPHQNQTKSTWQG 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 171971 174051 - Bpe023701.1 Bpe09g00021 108421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00021 488 SUPERFAMILY beta-beta-alpha zinc fingers 80 177 IPR036236 -
Bpe09g00021 488 MobiDBLite consensus disorder prediction 1 30 - -
Bpe09g00021 488 SMART c2h2final6 81 103 IPR013087 -
Bpe09g00021 488 SMART c2h2final6 157 177 IPR013087 -
Bpe09g00021 488 SMART c2h2final6 122 152 IPR013087 -
Bpe09g00021 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 470 - -
Bpe09g00021 488 Gene3D Classic Zinc Finger 60 131 - -
Bpe09g00021 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
Bpe09g00021 488 Pfam Zinc finger, C2H2 type 81 103 IPR013087 -
Bpe09g00021 488 MobiDBLite consensus disorder prediction 263 289 - -
Bpe09g00021 488 MobiDBLite consensus disorder prediction 253 302 - -
Bpe09g00021 488 Gene3D Classic Zinc Finger 135 214 - -
Bpe09g00021 488 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 18 470 - -
Bpe09g00021 488 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Bpe09g00021 488 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01952 Bpe-Chr2:21439405 Bpe09g00021 Bpe-Chr9:171971 6.84E-77 dispersed
Bpe09g00021 Bpe-Chr9:171971 Bpe10g00110 Bpe-Chr10:1913481 9.20E-116 dispersed
Bpe12g00644 Bpe-Chr12:12088773 Bpe09g00021 Bpe-Chr9:171971 4.20E-74 dispersed
Bpe03g00451 Bpe-Chr3:23599642 Bpe09g00021 Bpe-Chr9:171971 1.44E-102 transposed
Bpe06g00450 Bpe-Chr6:15883216 Bpe09g00021 Bpe-Chr9:171971 8.55E-116 transposed
Bpe08g01328 Bpe-Chr8:14495662 Bpe09g00021 Bpe-Chr9:171971 9.84E-96 transposed
Bpe10g00383 Bpe-Chr10:11416587 Bpe09g00021 Bpe-Chr9:171971 9.34E-122 transposed
Bpe14g00716 Bpe-Chr14:5582484 Bpe09g00021 Bpe-Chr9:171971 5.02E-98 transposed
Bpe06g00780 Bpe-Chr6:18046584 Bpe09g00021 Bpe-Chr9:171971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21840 PF00096 zf-C2H2 0.0049 CL0361 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00021 K25870 - qsu:111995117 597.43