Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00053 ATGGTGAAGCGCTGGAGCTGGAGCTGGAGCCCGCTGTTTTTGCTCATTAACGTCTGCATTCTGGAATGGAGGCCTAGTCTCGTGTATGGAGCCACAGATCCAGGAGATGCTGCTGCTCTAAGGGTCTTGTACACCTCTTTGAATTCTCCATCTCAGTTAACCCAGTGGAGTGCAAATGGTGATGATCCGTGCGGGCAGTCATGGAAGGGTGTTTCTTGCTCAGGCTCGCGGGTCACCGAAATTGTACTGTCTGGCCTGGGACTTTCTGGATCATTGGGATACCAGCTCACAAGTTTAACATCCACCACCAAATTAGATGTGAGCAATAACAATCTTGCTGGAGAGATAGCTTATCAGCTACCACCAAACTTACTTAGATTGGATCTTGGTCGTAATAATTTTAATGGCGGCATTCCTTACTCCATCTCTCAAATGACTACTCTACAGTACCTAAATATCAGCCATAACCAGCTTCAGAATCAACTGATTGATATGTTTGACAGCCTTTCATCTCTTGTCGCCCTGGATATTTCATATAATTCTTTGCCAGGTGCCCTCCCCAGGAGTTTTAGCTCCCTCTCCAGTATGAACACTATGTACTTGCAAAACAACCAATTCACTGGCACCATTGACGTCCTTACAAATCTTCCGCTTCAAAATTTGAATATTGAGAATAACCGGTTTACTGGTTGGATTCCAGAGAAGTTGAAAAACATTAATTTGCAGTCGAATGGTAACTCTTGGAGTTCGGGACCTGCCCCCCCTCCTCCACCTGGTACACCGCCAGTGCCCAAAAACAACCAAAATCGCGGCTCCAATGGAAATAATAGCCCCTCGAGTGGAGGTGGAGGTGGTGGTAAGTCAGGAATAGGAGGTGGTGCCATAGCTGGAATAGTTATATCTATTCTTGTCGTTGGATCGGTTATTGCCTTTTTCCTTGTAAAGAAAAGATCTAGGAAGTCATCCTCGGACATAGAAAAGCTCGATGACCGGGCTTTCGCGCCTCTTGCTTCGAATGAAGTTCAAGAAATGAAGTCAATAGAAACTCCCACCAAATTCAACGCAAAGACATTTGATCCATCAATTGGATTAAATCTTAAACCCCCACCTGTTGACCATCACAAATCATTTGATGAGGATGATTTCGCAAAGAAAGCTCTAGTCAAGAAGAAGGCCAATACGCCTCCTTCAAATTTAAAATCATTTTCAATAGCTGATTTACAGATGGCTACCGGCAGTTTCAATGTCGAAAATTTTCTTGGCGAAGGGTCGTTCGGGCGTGTTTATCGAGCTCAGTTTGATGATGGAAAGGTCTTTGCTGTGAAAAATATAGATTCATCTGCAATATCCCGTGACTTTTTTGAAGATTTCACAGAAATCATATCGAATATCTCCCAATTGCATCACCCGAATGTTACCGAGCTGATGGGTTACTGCTGGGAGCATGGGCATCATCTCCTAGTTTATGAATTCCATAAAAATGGCTCCCTTCATGAATTCTTACATTTATCTGACGAATACACTAAGCCGCTGACATGGAACTCTCGTGTCAAAATTGCATTAGGAATCGCCCGAGCTTTAGAGTACTTGCATGAAGTTTGTTCACCATCAATTGTTCATAAAAATATAAAATCAGCAAATATATTACTGGACGTGGAGCTCAATCCTCACCTATCCGAATGTGGGCTGGCCAGTTTCATGCCGGATCAGGCATTAGATAACAATACAGGGTCTGGATACAGTGCCCCAGAGGTCACCATGTCTGGTCAATACACTCTGAAGAGCGACGTCTACAGTTTCGGAGTTGTCATGTTAGAGGTTCTTAGTGGCCGAAAACCATTTGACAGTACAAGACTGATGGCCGAGCAATCCCTGGTTCGGTGGGCTACTCCTCGGTTGCATGACATTGATGCTTTATCGAAAATGGTTGATCCAGGACTCGAAGGGCTCTACCCCGCAAAATCCCTTTCTCGATTTGCAGATGTGATAGCTCTTTGCGTACAGCCTGAGCCGGAGTTTAGACCCCCTATGTCTGAAGTGGTGCAAGCGCTGGTTGTACTCGTGCAAAGGGCTAACATGAGCAAGAGAACGGTGAGAAACAATGATGGATCCCCACCACGCTCTGATGCTCCCGATGCATTGTAA 2145 44.9 MVKRWSWSWSPLFLLINVCILEWRPSLVYGATDPGDAAALRVLYTSLNSPSQLTQWSANGDDPCGQSWKGVSCSGSRVTEIVLSGLGLSGSLGYQLTSLTSTTKLDVSNNNLAGEIAYQLPPNLLRLDLGRNNFNGGIPYSISQMTTLQYLNISHNQLQNQLIDMFDSLSSLVALDISYNSLPGALPRSFSSLSSMNTMYLQNNQFTGTIDVLTNLPLQNLNIENNRFTGWIPEKLKNINLQSNGNSWSSGPAPPPPPGTPPVPKNNQNRGSNGNNSPSSGGGGGGKSGIGGGAIAGIVISILVVGSVIAFFLVKKRSRKSSSDIEKLDDRAFAPLASNEVQEMKSIETPTKFNAKTFDPSIGLNLKPPPVDHHKSFDEDDFAKKALVKKKANTPPSNLKSFSIADLQMATGSFNVENFLGEGSFGRVYRAQFDDGKVFAVKNIDSSAISRDFFEDFTEIISNISQLHHPNVTELMGYCWEHGHHLLVYEFHKNGSLHEFLHLSDEYTKPLTWNSRVKIALGIARALEYLHEVCSPSIVHKNIKSANILLDVELNPHLSECGLASFMPDQALDNNTGSGYSAPEVTMSGQYTLKSDVYSFGVVMLEVLSGRKPFDSTRLMAEQSLVRWATPRLHDIDALSKMVDPGLEGLYPAKSLSRFADVIALCVQPEPEFRPPMSEVVQALVVLVQRANMSKRTVRNNDGSPPRSDAPDAL 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 349895 355730 - Bpe023732.1 Bpe09g00053 108453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00053 714 Gene3D Phosphorylase Kinase; domain 1 377 491 - -
Bpe09g00053 714 MobiDBLite consensus disorder prediction 243 285 - -
Bpe09g00053 714 Pfam Protein tyrosine and serine/threonine kinase 416 684 IPR001245 GO:0004672|GO:0006468
Bpe09g00053 714 Gene3D Transferase(Phosphotransferase) domain 1 493 704 - -
Bpe09g00053 714 MobiDBLite consensus disorder prediction 250 264 - -
Bpe09g00053 714 SUPERFAMILY Protein kinase-like (PK-like) 395 685 IPR011009 -
Bpe09g00053 714 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Bpe09g00053 714 ProSitePatterns Protein kinases ATP-binding region signature. 420 442 IPR017441 GO:0005524
Bpe09g00053 714 PANTHER OS01G0253100 PROTEIN 25 710 IPR045271 GO:0004714|GO:0006468
Bpe09g00053 714 MobiDBLite consensus disorder prediction 265 283 - -
Bpe09g00053 714 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 25 710 - -
Bpe09g00053 714 Gene3D Ribonuclease Inhibitor 33 257 IPR032675 -
Bpe09g00053 714 SUPERFAMILY L domain-like 33 243 - -
Bpe09g00053 714 ProSiteProfiles Protein kinase domain profile. 414 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe09g00053 714 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00053 - - - vvi:100249831 973.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe09g00053 Bpe10g00721 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01463 Bpe-Chr4:21243681 Bpe09g00053 Bpe-Chr9:349895 5.84E-74 dispersed
Bpe09g00053 Bpe-Chr9:349895 Bpe14g00667 Bpe-Chr14:5332924 7.91E-159 dispersed
Bpe09g00053 Bpe-Chr9:349895 Bpe07g00562 Bpe-Chr7:12165674 5.66E-159 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g3 . Blo06g00768 . Bda10g00896 . Bpe10g00721 . . Cmo08g00808 . . . . . Sed06g2300 . . Bhi01g02842 Tan04g2853 Cmetu03g1773 Lac12g2524 . . . . . . . . . . . . . . . . . . . . . . . Bpe09g00053 . . . . . Cma08g00837 . Car08g00721 . . . . . . . . . . . . . . . . . . . . .
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe07g00562 . 38 780 Strubbelig Receptor Gene Family AT4G03390 62.8 3.3e-213 738.4
Bpe14g00667 . 24 756 Strubbelig Receptor Gene Family AT4G03390 60.8 2.0e-205 712.6
Bpe09g00067 . 302 562 Strubbelig Receptor Gene Family AT4G03390 56.3 2.0e-77 287.3
Bpe09g00067 . 302 577 Strubbelig Receptor Gene Family AT1G78980 68.1 3.6e-105 379.4
Bpe07g00562 . 34 654 Strubbelig Receptor Gene Family AT2G20850 51.1 4.3e-137 485.3
Bpe14g00667 . 20 632 Strubbelig Receptor Gene Family AT2G20850 50.8 7.3e-129 458.0
Bpe09g00067 . 302 560 Strubbelig Receptor Gene Family AT3G13065 65.3 2.3e-93 340.1
Bpe09g00053 CCT 389 684 Strubbelig Receptor Gene Family AT1G11130 50.2 3.0e-80 296.6
Bpe07g00562 . 34 654 Strubbelig Receptor Gene Family AT2G20850 51.1 4.3e-137 485.3
Bpe14g00667 . 20 632 Strubbelig Receptor Gene Family AT2G20850 50.8 7.3e-129 458.0
Bpe07g00562 . 38 780 Strubbelig Receptor Gene Family AT4G03390 62.8 3.3e-213 738.4
Bpe14g00667 . 24 756 Strubbelig Receptor Gene Family AT4G03390 60.8 2.0e-205 712.6
Bpe09g00067 . 302 562 Strubbelig Receptor Gene Family AT4G03390 56.3 2.0e-77 287.3
Bpe09g00067 . 302 560 Strubbelig Receptor Gene Family AT3G13065 65.3 2.3e-93 340.1
Bpe09g00067 . 302 577 Strubbelig Receptor Gene Family AT1G78980 68.1 3.6e-105 379.4
Bpe09g00053 CCT 4 698 Strubbelig Receptor Gene Family AT1G53730 59.9 2.0e-196 682.6
Bpe09g00067 . 300 568 Strubbelig Receptor Gene Family AT1G53730 62.6 3.9e-91 332.8
Bpe09g00053 CCT 15 704 Strubbelig Receptor Gene Family AT3G14350 59.3 2.8e-187 652.1
Bpe09g00067 . 300 579 Strubbelig Receptor Gene Family AT3G14350 57.1 2.0e-76 283.9
Bpe09g00053 CCT 396 703 Strubbelig Receptor Gene Family AT4G22130 63.8 5.4e-112 401.7
Bpe07g00562 . 467 772 Strubbelig Receptor Gene Family AT4G22130 58.6 3.3e-101 365.9
Bpe14g00667 . 445 750 Strubbelig Receptor Gene Family AT4G22130 58.3 8.9e-99 357.8
Bpe11g01163 . 402 721 Strubbelig Receptor Gene Family AT4G22130 55.4 6.4e-97 351.7
Bpe09g00067 . 300 575 Strubbelig Receptor Gene Family AT4G22130 59.9 2.3e-91 333.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63493 PF07714 PK_Tyr_Ser-Thr 9.80E-42 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00053 Bpe_Chr09 FPKM 17.325607 16.073524 2.651754 2.689448 2.626705 2.93721 2.828857 3.036976 2.907922 2.630642