Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00067 ATGGGTAGTTCGTTTCAGGATTTGGAGAACGAGCTTTGGTTTCAGAACATTCTTGCCGCCTGGGCAACTATTTTGTCTCTCTGTTTAATTATAATTTGCCATTGTTTTTTTACCAAGAAGAATTTTTTATCACTCTTTCGGTTTCGGACCTCTATTGTCGTATCTAATTCCGCGGATCTCCCTGCGTCTCGCTCTCAGAATCCACAGTTCAGAATACCAGGGTTAGTGACAAATGATGATTTGAAGTTTTTAATTGAAAACCTGGATGGGAAAAACTTTGAGAATGAGAAATGGAACAATGTTGTTGATAGAAAAAATGGTTCAGTGTACTACAATGCCAAATGTTGCAAGCCTAAGAATGGTCCACTGACGTACTTGAGTGTGACGGTGTTTGAAGATTGTCTTCCTGAAATGTTAAAAGACTTTTACATGGACAATGATTATAGAAAGAGTTGGGACAAAATGCTGGTTTCGCATGAGCAACTACAGGTGGATGAAACATGTGGAGTTGAAGTTGGTCGCAGCATTAAAAAATTCCCACTATTGACACCTAGAGAATATGTGCTGTCCTGGAGATTGTGGGAGGGAAAAGATGGAACATTCTACTGTTTTATAAAGGAATGCGAACATCCTCTAGCTCCATGGCAGAAAAAGTATGTTCGAGTTAAATTATTCAGATCTGGTTGGCGAATTAGGAAAGTATCTGGTAGAAATGCATCTGAAATAAAAATGTTTCACCAAGAAGATGCCGGTTTGAATGTGGAAATGGCTAAACTTGCTTTTGCTAAGGGTATATGGAGTTATATATGTAAGATGAATGTGGCATTACGCAAGTACCATCAAATCAACCACCCCCAGGCCATTTCAGCAGTGACTGCAGTTACTTTAGTTAGTAAGGTTACAGCTGTAAAAAAAATAGAGTCATCTCTTTTTCAAGGATGGCAGCCGGATGAATTTTCTGAGATTGTGGCTAACATGGAGAAACTTCACCACCCAAACATTGCAGAGCTTGTAGGATATTGTTCAGAACAAGGGCATCGCATGTTAGTCTTTGATTATTTCAGGAATGGCTCCCTTCATGAATACTTGCACATGTCAGATGACTTTAGCAAACCACTAACATGGAATACTAGAGTTAGAATCGCCTTGGGGATGGCACGGGCCATTGAGTACCTCCATGAGGTGTGTTCACCATCTTTAATTCACAAGAACATAAAGTCGTCTAATATTTTGCTGGACACTGAGCTCAATCCCCATCTCTCTGACTGTGGATTGGCAACTTTCTATGAGGTTCCGACCATAAGCTTAAGTTTCTATTACAACATTTGGACAAATTTTAAGCCAATTTTTGGATACTGTGCCCCTGAGTGCAATGAGCCATCAGCTTATACATTGAAGAGTGATGTGTACAGTTTTGGAGTGGTGATGCTGGAGTTGTTGACGGGTCGAATGCCTTTAGACAGTTCAAAAGCAAAGCCAGAACAGTGCCTGGTCTGGTGGGCAAGCCCACAGCTCCATGACATTGATGCTTTGGCAAAAATGGTCGACCCTGCATTGCGTGGATTATACCCTCCCAAATCGGTTTCTCGGTTTGCTGATATCATTGCCCTCTGCGTACAGTCTGAGCCTGAATTTAGGCCTCCCATGTCAGAGGTGGTGCAAGCATTGGTCCGGTTAGTTCAACGATCGAGTATGACAATGAGGGATGATCTCGGAGCAAGCTTTTCGTCGGACGGATGA 1740 41.78 MGSSFQDLENELWFQNILAAWATILSLCLIIICHCFFTKKNFLSLFRFRTSIVVSNSADLPASRSQNPQFRIPGLVTNDDLKFLIENLDGKNFENEKWNNVVDRKNGSVYYNAKCCKPKNGPLTYLSVTVFEDCLPEMLKDFYMDNDYRKSWDKMLVSHEQLQVDETCGVEVGRSIKKFPLLTPREYVLSWRLWEGKDGTFYCFIKECEHPLAPWQKKYVRVKLFRSGWRIRKVSGRNASEIKMFHQEDAGLNVEMAKLAFAKGIWSYICKMNVALRKYHQINHPQAISAVTAVTLVSKVTAVKKIESSLFQGWQPDEFSEIVANMEKLHHPNIAELVGYCSEQGHRMLVFDYFRNGSLHEYLHMSDDFSKPLTWNTRVRIALGMARAIEYLHEVCSPSLIHKNIKSSNILLDTELNPHLSDCGLATFYEVPTISLSFYYNIWTNFKPIFGYCAPECNEPSAYTLKSDVYSFGVVMLELLTGRMPLDSSKAKPEQCLVWWASPQLHDIDALAKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVRLVQRSSMTMRDDLGASFSSDG 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 465762 475666 - Bpe023746.1 Bpe09g00067 108467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00067 579 CDD START_STARD2_7-like 74 279 - -
Bpe09g00067 579 Pfam START domain 94 246 IPR002913 GO:0008289
Bpe09g00067 579 Gene3D - 72 282 IPR023393 -
Bpe09g00067 579 SUPERFAMILY Protein kinase-like (PK-like) 291 556 IPR011009 -
Bpe09g00067 579 ProSiteProfiles Protein kinase domain profile. 276 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe09g00067 579 Gene3D Transferase(Phosphotransferase) domain 1 355 574 - -
Bpe09g00067 579 Pfam Protein tyrosine and serine/threonine kinase 301 556 IPR001245 GO:0004672|GO:0006468
Bpe09g00067 579 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 299 576 - -
Bpe09g00067 579 Gene3D Phosphorylase Kinase; domain 1 289 354 - -
Bpe09g00067 579 PANTHER OS01G0253100 PROTEIN 299 576 IPR045271 GO:0004714|GO:0006468
Bpe09g00067 579 ProSiteProfiles START domain profile. 94 281 IPR002913 GO:0008289
Bpe09g00067 579 SUPERFAMILY Bet v1-like 94 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00067 - - - qlo:115989205 433.335
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00562 Bpe-Chr7:12165674 Bpe09g00067 Bpe-Chr9:465762 2.45E-83 dispersed
Bpe09g00067 Bpe-Chr9:465762 Bpe14g00667 Bpe-Chr14:5332924 2.25E-86 dispersed
Bpe11g00376 Bpe-Chr11:2851684 Bpe09g00067 Bpe-Chr9:465762 2.28E-34 dispersed
Bpe14g01229 Bpe-Chr14:9210481 Bpe09g00067 Bpe-Chr9:465762 3.89E-33 dispersed
Bpe04g01463 Bpe-Chr4:21243681 Bpe09g00067 Bpe-Chr9:465762 3.73E-69 transposed
Bpe03g00709 Bpe-Chr3:27235795 Bpe09g00067 Bpe-Chr9:465762 2.58E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g1107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag0869 . . . . . . . Blo10g00929 . . . Bpe09g00067 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe07g00562 . 38 780 Strubbelig Receptor Gene Family AT4G03390 62.8 3.3e-213 738.4
Bpe14g00667 . 24 756 Strubbelig Receptor Gene Family AT4G03390 60.8 2.0e-205 712.6
Bpe09g00067 . 302 562 Strubbelig Receptor Gene Family AT4G03390 56.3 2.0e-77 287.3
Bpe09g00067 . 302 577 Strubbelig Receptor Gene Family AT1G78980 68.1 3.6e-105 379.4
Bpe07g00562 . 34 654 Strubbelig Receptor Gene Family AT2G20850 51.1 4.3e-137 485.3
Bpe14g00667 . 20 632 Strubbelig Receptor Gene Family AT2G20850 50.8 7.3e-129 458.0
Bpe09g00067 . 302 560 Strubbelig Receptor Gene Family AT3G13065 65.3 2.3e-93 340.1
Bpe09g00053 CCT 389 684 Strubbelig Receptor Gene Family AT1G11130 50.2 3.0e-80 296.6
Bpe07g00562 . 34 654 Strubbelig Receptor Gene Family AT2G20850 51.1 4.3e-137 485.3
Bpe14g00667 . 20 632 Strubbelig Receptor Gene Family AT2G20850 50.8 7.3e-129 458.0
Bpe07g00562 . 38 780 Strubbelig Receptor Gene Family AT4G03390 62.8 3.3e-213 738.4
Bpe14g00667 . 24 756 Strubbelig Receptor Gene Family AT4G03390 60.8 2.0e-205 712.6
Bpe09g00067 . 302 562 Strubbelig Receptor Gene Family AT4G03390 56.3 2.0e-77 287.3
Bpe09g00067 . 302 560 Strubbelig Receptor Gene Family AT3G13065 65.3 2.3e-93 340.1
Bpe09g00067 . 302 577 Strubbelig Receptor Gene Family AT1G78980 68.1 3.6e-105 379.4
Bpe09g00053 CCT 4 698 Strubbelig Receptor Gene Family AT1G53730 59.9 2.0e-196 682.6
Bpe09g00067 . 300 568 Strubbelig Receptor Gene Family AT1G53730 62.6 3.9e-91 332.8
Bpe09g00053 CCT 15 704 Strubbelig Receptor Gene Family AT3G14350 59.3 2.8e-187 652.1
Bpe09g00067 . 300 579 Strubbelig Receptor Gene Family AT3G14350 57.1 2.0e-76 283.9
Bpe09g00053 CCT 396 703 Strubbelig Receptor Gene Family AT4G22130 63.8 5.4e-112 401.7
Bpe07g00562 . 467 772 Strubbelig Receptor Gene Family AT4G22130 58.6 3.3e-101 365.9
Bpe14g00667 . 445 750 Strubbelig Receptor Gene Family AT4G22130 58.3 8.9e-99 357.8
Bpe11g01163 . 402 721 Strubbelig Receptor Gene Family AT4G22130 55.4 6.4e-97 351.7
Bpe09g00067 . 300 575 Strubbelig Receptor Gene Family AT4G22130 59.9 2.3e-91 333.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008764 2 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 0 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63496 PF07714 PK_Tyr_Ser-Thr 1.40E-37 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00067 Bpe_Chr09 FPKM 34.429485 37.597435 24.325247 24.065777 21.029264 27.433802 22.973623 28.621189 25.855234 28.330458