Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00092 ATGGCGATGCGCGATTTGGTTGCAGGCGGTGCCGTTTGTGCCGTTCCTGGCTCTTCTTCGCCTTCGAATCCTCTTGGTGCTCTTGCTAACGTTCTTATTGGCTCCTCTTCCAAGTCTCAGCAGGAAAGGTTAAAGGAGATTCCTACATTGACGTCTACTTCTGATCGGCAATTAGTCCAGGAGCAATTCGACCTTCCAGGTTCTGAGTTTGATCAGCCTTTTCTGCAGCCTCATGCTCAGGCTTCAGAGTTCTTTAATGGATTTCGCTCTTCTGGCAATGCAAGCAGTCTGGCTGATGCGTGGGATGAGATTCAACCCGCCGTCTCTGAGTTTCATGGAGTTTATGGTCGATCATCTGGTTCCCAGATTCAACCAACTTTTGATGGTCCACCACAAAGAGTATTGTCAAACTTTTTGCACTCATTTGTCGGAACTAGTCGTGGTGGGATTCCTTTTCATCCGACTGCACTTCCAGTATTGGGATTATCTCAAGGTGATAAACAATGTATTCGTGACCGTAGCAGCATAATGGCGAGGCACATTTTTGCCGATAAAAGTGAAGATTTTATTGAATATCAGGTAAATTCGCTGTTAGCTTCTCTAGATATTGACAATGATGCACTGGCAAAGGGATTTATGCCTGGAAGATTCCGAGAGCTAGAAGACTACTGGAATGAGTCCCAAAGTATCAGGAAACCTCTTGGTCAGTCTGCAGATGGATGGGTTGCCGAATATGGGCAGCAGAGGTTACAATATGGAGAACCTGAGGCTTGGGCGCGCTCGTTTGAACAACAACATGGTGCTGGTGGATGGGCCTCTGAATTTGAGCAGGAGCAGTTTCAACTGGCCTCTATGGGTCAAATGAAAGATGTGAATATTGCCAACGAAGCTGCAATGGAGCAAACCCGTCTACTTGCCAATACATTAGCTCAAAATGAAGACCCTAAATTTCAGAACTCCCAGTTTCGTCAGTTCTTATCAAAGATGAGTCAAGGGGAGCTTATTATTGATGAAAATCAAGTTAAGCAGACTTCATTACCAACATCAGATAACTGGGCGTCTGAGTACCAACAACAGTATCGTGGGGGTTCTAACTGGGCTGATGAATTTGTTTCTACTCGAACTAATCAATGGGTCAATGAGTTTTCCAAAGAGGAGCACCGTGGTCCAGATGATCAGTGGGTCAATGAGTTTTCTAAGTTGAATGTTGATGACTGGGTTGAAGAATTTGGGCAGAAAGTTGGCGAAGGTGCTTTAGGAGACAACTCCAATGATAATTGGGCTGATTCATATGATGAGTTTCTAAATGGCCAAATACCTTCCAAGAAAGATGCGTCAAAGGGAATCTATGTTTTCTCGGATATGAATCCTTATGTTGGACACCCTGACCCCTTAAAAGAAGGCCAGGAACTGTTCCGCAGCGGTCTTTTGAGTGAGGCAGTACTTGCTTTGGAGGCTGAAGTTTTGAAAAACCCTGAAAATGCTGAAAGTTGGAGGCTGCTTGGAGTTACACATGCTGAGAATGACGATGACCAACAGGCAATTGCGGCGATGATGCATGCTCAGGAGGCGGATCCAACAAATTTGGAGGTGCTTCTTGCTCTGGGTGTGAGTCATACAAATGAATTAGAACAGGGTGCTGCTTTGAAATATTTATATGGGTGGCTGCGTCATCACCCAAAGCTGGGAACTCTTGCCAATCCTGATCTTGAAAATACTTTGTATTATAATGATGTTGCTAGAGTATTTAATGAAGCAGCTAGAATGATGCCTGATGATGCTGATGTGCATGTAGTACTTGGTGTTCTTTATAATTTGGCTCGAGAATATGACAAAGCCGTTTCGTCTTTCCAGACAGCTTTGAAATTAAAGCCACAGGATTACTCTCTTTGGAACAAGTTAGGTGCAGCTAAAGCGAACAGTATTCAGAGTGCTGATGCAATATCGGCCTATCAAAAGGCACTAGATTTGAAACCTAATTACGTACGTGCATGGGCCAACATGGGGATCAGTTACGCCAACCAGGGCTTGTACGAGGAATCAGTTCGATATTATGTCCGGGCTCTATGTATGAACCCCAAGGTAGATAATGCGTGGCAATATCTAAGACTTTCATTGAGTTGTGCCTCGAGGAATGACATGTTTGAAGCTTGCGATTCTCGCAATCTTGACGCTCTTCAGAAAGAGTTCCCCTTATGA 2199 44.43 MAMRDLVAGGAVCAVPGSSSPSNPLGALANVLIGSSSKSQQERLKEIPTLTSTSDRQLVQEQFDLPGSEFDQPFLQPHAQASEFFNGFRSSGNASSLADAWDEIQPAVSEFHGVYGRSSGSQIQPTFDGPPQRVLSNFLHSFVGTSRGGIPFHPTALPVLGLSQGDKQCIRDRSSIMARHIFADKSEDFIEYQVNSLLASLDIDNDALAKGFMPGRFRELEDYWNESQSIRKPLGQSADGWVAEYGQQRLQYGEPEAWARSFEQQHGAGGWASEFEQEQFQLASMGQMKDVNIANEAAMEQTRLLANTLAQNEDPKFQNSQFRQFLSKMSQGELIIDENQVKQTSLPTSDNWASEYQQQYRGGSNWADEFVSTRTNQWVNEFSKEEHRGPDDQWVNEFSKLNVDDWVEEFGQKVGEGALGDNSNDNWADSYDEFLNGQIPSKKDASKGIYVFSDMNPYVGHPDPLKEGQELFRSGLLSEAVLALEAEVLKNPENAESWRLLGVTHAENDDDQQAIAAMMHAQEADPTNLEVLLALGVSHTNELEQGAALKYLYGWLRHHPKLGTLANPDLENTLYYNDVARVFNEAARMMPDDADVHVVLGVLYNLAREYDKAVSSFQTALKLKPQDYSLWNKLGAAKANSIQSADAISAYQKALDLKPNYVRAWANMGISYANQGLYEESVRYYVRALCMNPKVDNAWQYLRLSLSCASRNDMFEACDSRNLDALQKEFPL 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 630927 638415 - Bpe023770.1 Bpe09g00092 108492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00092 732 ProSiteProfiles TPR repeat profile. 594 627 IPR019734 GO:0005515
Bpe09g00092 732 ProSiteProfiles TPR repeat region circular profile. 662 694 - -
Bpe09g00092 732 ProSiteProfiles TPR repeat profile. 628 661 IPR019734 GO:0005515
Bpe09g00092 732 SMART tpr_5 628 661 IPR019734 GO:0005515
Bpe09g00092 732 SMART tpr_5 594 627 IPR019734 GO:0005515
Bpe09g00092 732 SMART tpr_5 495 528 IPR019734 GO:0005515
Bpe09g00092 732 SMART tpr_5 662 695 IPR019734 GO:0005515
Bpe09g00092 732 Gene3D Tetratricopeptide repeat domain 444 732 IPR011990 GO:0005515
Bpe09g00092 732 SUPERFAMILY TPR-like 447 732 IPR011990 GO:0005515
Bpe09g00092 732 PANTHER BNAC09G53570D PROTEIN 1 732 - -
Bpe09g00092 732 ProSiteProfiles TPR repeat profile. 495 528 IPR019734 GO:0005515
Bpe09g00092 732 Pfam TPR repeat 646 676 - -
Bpe09g00092 732 ProSiteProfiles TPR repeat region circular profile. 594 627 - -
Bpe09g00092 732 Pfam Tetratricopeptide repeat 465 527 - -
Bpe09g00092 732 Pfam Tetratricopeptide repeat 580 627 - -
Bpe09g00092 732 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 732 IPR024111 -
Bpe09g00092 732 ProSiteProfiles TPR repeat profile. 662 695 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00092 K13342 PEX5, PXR1; peroxin-5 - zju:107417371 1083.17
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00732 Bpe09g00092 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00092 Bpe-Chr9:630927 Bpe15g00626 Bpe-Chr15:17084090 3.39E-08 dispersed
Bpe04g00231 Bpe-Chr4:1559730 Bpe09g00092 Bpe-Chr9:630927 4.79E-08 transposed
Bpe04g00640 Bpe-Chr4:4048732 Bpe09g00092 Bpe-Chr9:630927 5.91E-06 transposed
Bpe03g00732 Bpe-Chr3:27411169 Bpe09g00092 Bpe-Chr9:630927 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g800 . . . . Bpe09g00092 . . Bma13g01149 Cmo16g01055 . . . . . . . . . . . . . . . Cla10g00338 Cam10g0351 Cec10g0364 Cco10g0359 Clacu10g0352 Cmu10g1188 Cre10g0599 . . Cone14ag1279 Cone15ag1306 . Csa03g00358 . Cme06g02675 Blo07g00850 . Bda05g00656 Bda12g00995 . Bpe03g00732 . . Sed08g2850 . . . . . . Cpe14g00832 . Bhi11g00375 Tan01g1931 Cmetu06g1763 . Hepe06g1219 Mch10g1459 . . . . . . . . . . Chy06g01965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004195 3 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00092 Bpe_Chr09 FPKM 13.1203 11.620334 32.005993 33.000477 6.650614 5.690301 7.486361 18.462835 21.119215 29.010567