Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00095 ATGGCGGGAATTGAAGAAAATGTTGCTTTGAGTGGAGACTGGCTGGCTCCCAGTCCCAGCCCAAGAACATTCTTCTCTGCAATGCTTGGTGAAGATTTTGGCTCAAGGTCTGCTGCAATGGAGTCTGGTAGGAATAATCAAGAGGCATTCTTTCTCATATCACAAGAGGAGAGGTTTATGGAAAACTCCGAGGCTATGGAGGGGACTCCACCTTCTTCGGCCGCGGTATCGACGTTTTCAGAGCAGAAAGCGAATGTACGATCTGGTCTCGGCGAAAGAATAGCAGCCAGAGCTGGATTCAATGCTCCAAGACTAAATACAGAAAGTATTAGAACTTCTGATCTTTTGCTGGATTCCGATATCAAGTCTCCGTTCTGGACGATTCCGCCTGGTCTCAGTCCGACTACTCTGCTCGATTCTCCGGTTTTTCTTTCAAATTCACTGGTTCAGCCATCTCCGACCACCGGAAAACTTCCATTTTTTACTAGTGATAACATTCTGAGCTCCTCTTTAATGTCGGAAGAAAGTAATAGAAGTAAAGATCATCTCTTTAGTAGTATCAATACTCCCCCATTTGCTTTTAAGCCGGGAGATGATATGAGACTGCCTTTTGTTCTTGGTGCAATGGCTCCAACCACTCATCCGCAGCCATCTTTTCCGGCGGATGCTTCGGTACAGTCAGAGAGTTCTCTTAAATCTCACAGTGCAGAACTGTCTAAACCTCTGTCGAAAGGTCATGGAGATTTTTCGCCGGATCAAAGATTCTTTGATTCTATTGATGAAGGCAACAAACATTCTCCGCCGTTCAGTGAGCGTCAAGACGAAGACGGAGATCAAAGAGCCACCGGAGAGTCGGTGGTTCCGAATAATTGCAGTGCCTCATCCGACGATGGATATAACTGGAGAAAATATGGACAGAAACAGGTAAAAGGAAGTGAGTATCCGAGAAGTTATTATAAATGCACTCATCCAAACTGTCAGGTTAAGAAGAAGGTTGAACGCTCCTACGAGGGCCACATAACGGAGATCATCTATAAGGGCGCACATAACCACCCGAAGCCTTCCCCAAATCGGTGTAATCCGATGCAAAGAGACGTGAATGAACAGCCACAGAGTTGCGAAGCTGATCTACTCTGGACAAGCCAGCAAAAAAGGAATTGGGCTGGAGCTTCTGATTGGAGGAATGACAACCCCGAGGTTACGTCTTCGGCTTTGGTGGGTCACGAATACGTCAATCAATCCACCTCTTTACAGGCTCAGAACAGCTCCCATTTTGAGCAAGGCGATGCAGTTGACGTTTCCTCTACGTTTTCCAACGACGAAGACGAAGAAGATCGAGGAACTCATGGGAGCGTGTCAATAGGCCATGATGGTGAAGAAGACGAATCCGAATCGAAGAGAAGGAAAATTGAAGTTTATGCAAGTGAAATGAGTGGAGCTTCACGAGCCATCCGAGAGCCTCGAGTCGTAGTCCAGACAACTAGTGAAGTAGATATTCTTGATGATGGATATCGTTGGCGCAAATACGGACAAAAAGTCAATCAACTGCTTTTATGCAGGAGTTACTACAAGTGCACGGCTGCTGGCTGCACAGTGAGGAAACACGTCGAGAGAGCTTCTCACGACCTTAAATCAGTAATAACAACATACGAAGGAAAGCATAATCATGACGTGCCGGCTGCACGTAATAGCAGCCACATGAACGCCCCAACTTCCGGCTCGGTGGCAGCTCAAGCTCCATTGACGGGGATTCAAAACCATGGTCACCGGCCGGAGCCATCTCAAGCTCACACTGGAATGGCAAGGTTCGACAGACCACCACAACTTGGTCCGTTTGGCCTTGCCGGAATGCAGCAGGTAGGCCCCCCTCTCCCTGCCCATGGTTTCAGTTATGCGATGAACCACCCTCCGACCCTGCCAAACCTGGCTTTGCCTGTGGTGGGACCCCACGGCCAAGTCAAGCTTCCGGTTCTACCGTTTCATCCTTACATGGCTCAGCATCGGCAGGGGGATGAAATGAGGTTTGGGATGCCGAAAGGAGAAATGAAGGTGGAGCCGATGACGGAAGCTGTGTATCAGCAGATAATGAGTAGGCTTCCGCTCGGACCTCACGTATAA 2118 48.35 MAGIEENVALSGDWLAPSPSPRTFFSAMLGEDFGSRSAAMESGRNNQEAFFLISQEERFMENSEAMEGTPPSSAAVSTFSEQKANVRSGLGERIAARAGFNAPRLNTESIRTSDLLLDSDIKSPFWTIPPGLSPTTLLDSPVFLSNSLVQPSPTTGKLPFFTSDNILSSSLMSEESNRSKDHLFSSINTPPFAFKPGDDMRLPFVLGAMAPTTHPQPSFPADASVQSESSLKSHSAELSKPLSKGHGDFSPDQRFFDSIDEGNKHSPPFSERQDEDGDQRATGESVVPNNCSASSDDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSYEGHITEIIYKGAHNHPKPSPNRCNPMQRDVNEQPQSCEADLLWTSQQKRNWAGASDWRNDNPEVTSSALVGHEYVNQSTSLQAQNSSHFEQGDAVDVSSTFSNDEDEEDRGTHGSVSIGHDGEEDESESKRRKIEVYASEMSGASRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVNQLLLCRSYYKCTAAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHMNAPTSGSVAAQAPLTGIQNHGHRPEPSQAHTGMARFDRPPQLGPFGLAGMQQVGPPLPAHGFSYAMNHPPTLPNLALPVVGPHGQVKLPVLPFHPYMAQHRQGDEMRFGMPKGEMKVEPMTEAVYQQIMSRLPLGPHV 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 657603 660275 + Bpe023774.1 Bpe09g00095 108495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00095 705 ProSiteProfiles WRKY domain profile. 296 354 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe09g00095 705 MobiDBLite consensus disorder prediction 213 298 - -
Bpe09g00095 705 MobiDBLite consensus disorder prediction 283 298 - -
Bpe09g00095 705 MobiDBLite consensus disorder prediction 440 467 - -
Bpe09g00095 705 MobiDBLite consensus disorder prediction 435 467 - -
Bpe09g00095 705 MobiDBLite consensus disorder prediction 250 281 - -
Bpe09g00095 705 MobiDBLite consensus disorder prediction 217 237 - -
Bpe09g00095 705 ProSiteProfiles WRKY domain profile. 495 559 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe09g00095 705 SUPERFAMILY WRKY DNA-binding domain 294 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe09g00095 705 Gene3D WRKY domain 485 560 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe09g00095 705 Gene3D WRKY domain 282 355 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe09g00095 705 PANTHER WRKY TRANSCRIPTION FACTOR 2-RELATED 101 641 - -
Bpe09g00095 705 SUPERFAMILY WRKY DNA-binding domain 492 559 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe09g00095 705 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 101 641 IPR044810 GO:0003700
Bpe09g00095 705 SMART WRKY_cls 500 558 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe09g00095 705 SMART WRKY_cls 295 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe09g00095 705 Pfam WRKY DNA -binding domain 501 556 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe09g00095 705 Pfam WRKY DNA -binding domain 296 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00095 K18835 WRKY2; WRKY transcription factor 2 - qsu:111999931 842.032
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00733 Bpe09g00095 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00760 Bpe-Chr3:27637758 Bpe09g00095 Bpe-Chr9:657603 2.11E-90 dispersed
Bpe09g00095 Bpe-Chr9:657603 Bpe09g00135 Bpe-Chr9:910747 3.51E-81 dispersed
Bpe03g00733 Bpe-Chr3:27429969 Bpe09g00095 Bpe-Chr9:657603 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g794 . . . . Bpe09g00095 . Bma10g00638 Bma13g01146 . Cmo06g00665 . . . . . . . . . . . . . . Cla10g00374 . . . . . . . . Cone14ag1277 Cone15ag1303 . . . . . Blo10g00892 . Bda12g00992 . Bpe03g00733 . . . . . . Cma16g00995 . Car16g00952 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004749 1 2 1 2 2 1 1 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21849 PF03106 WRKY 2.80E-24 CL0274 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00095 Bpe_Chr09 FPKM 0.0 0.0 0.09495 0.111001 5.44016 5.684385 4.783683 0.0 0.0 0.065663