Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00096 ATGTTGGGAGGGGAATATAGTGATCAGAATCATCTGCTTAGATCAACGGAGGATCATGTAGAGGATAAAGACTTAGAAGCTCGTAATGGAGACGGCGATGCAGATGGAGTCCAAAGCCACAATTGCGGGAGTGGTAGTGGAAGATTAGCCGGAGGCTTTATGGATCTGTTTAAGCATTTGAATAGAGGGAGCTTCTCTGGACGCCGTCACAGCTTCAAGCGTCTCGACGGCAATCGAATTAACGATTCCGCATCTCCCGGTGGTAGAGGTGTGGATAGTCATCATCTTCACTCTTATAATGATAACTTTAATCTTCGTCTTCATCATGCCCCTACTGTCAACACCGCCGGTGAGGCCGATTCGGACGACATGCTAGACGACACCGCCCCACCGGAATGGGCGTTGCTCCTTATTGGCTGCCTCGTTGGCCTCGCAACAGGCCTATGTGTTGCTGCATTTAACAAAGGGGTGCATGTAATTCATGAATGGGCATGGGCCGGCACTCCAAACGAGGGTGCTGCTTGGCTTCGGTTACAGAGATTAGCTGATACTTGGCATCGCATTCTTCTAATACCAGTCGCTGGAGGTGTCATTGTTGGCATGATGCATGGTTTAGTTGAAATACTCTACGAAATCAAGCAATCCAGTCCTTCTCAAAGGCCGGGATTTGATTTACTTGCTGGAGTCTTTCCCACGGTCAAGGCCATTCAGGCAGCTATCACTTTGGGTACTGGTTGTTCATTAGGCCCCGAAGGACCTAGTGTGGATATTGGAAAATCTTGTGCAAATGGGTTCTATTTAATGATGGAAAACAACAGTGAAAGAATAAAAATAGCCTTTGTTGCTGCTGGTGCAGCTGCTGGAATAGCTTCAGGCTTTAATGCAGCTGTTGCTGGTTCCTTCTTTGCTATAGAGACTGTTTTAAGGTCCCAACGAGCTGAAAATTCACCACCATTTACAACTGCAATGATTATTCTTGCTTCTGTTATCTCATCTACCGTTTCAAATGTTTTACTTGGGACACAGTCAGCTTTTACTGTTCCTACATATGATTTGAAGTCTGCAGCAGAATTACCTTTATACCTGATATTGGGCATGCTATGTGGAGTAGTGAGTGTGGCTGTGACTCGGTTAGTCAGTTGGTTTCATAAATCATTTGACCTTATCAAGGACAGATTTAGCCTCCCTGCCATTGTCTGTCCTGCTTTAGGCGGTTTAGGAGCTGGAATAATTGCTCTTAAGTATCCAGGAATTCTGTATTGGGGCTTCACAAATGTGGAAGAAATCCTACATACTGGAAAGAGTGCCTCTGCTCCTGGAATCTGGTTGTTAACTCAATTAGCTGCGGCGAAGGTTGTTGCAACTGCTTTATGCAAGGGTTCTGGACTTGTGGGTGGCCTTTATGCCCCAAGTCTAATGATTGGTGCAGCAGTTGGTGCTGTATTTGGTGGTTCAGCTGCAGAAGTTATTAATTCTGCCATTCCTGGAAATGCAGCCGTTGCACAGCCACAAGCATATGCACTGGTTGGAATGGCTGCTACACTTGCTTCAGTTTGTTCAGTTCCCTTGACGTCAGTTCTTCTTCTGTTTGAGCTGACAAAGGATTACAGGATTCTTCTTCCTCTCATGGGAGCTGTTGGATTAGCCATATGGGTTCCTTCAGTGACAAAGCAAAGCAAGGAGATTGAAGCTTCTGAAAATCATGGGTCTTCCAGAGGCTATTCTTCCCTTTCTCCTTCTGAACGTAATATTGAAATTACAAGGAGATGGAATGATGCAAGCAATAATTTGGAACTCTCAACTATTGAAAATGTATCAGTCTGCCAGACAATTGATGAAGATATTCTTATGGAAAATATGAAGGTTTCTCAGGCAATGTCAAAGAACTTTCTGAAGATTTCATTATCAACAAGCTTGAAGGATGCAATCAAATATATGAATGAAAGTCAACAGAACTGTGCTTTAGTGGTGGATGATGGAGATTTTCTTGAGGGAATATTAACAAATGGTGACCTTAGACGGTATCTGTCTAAAGTGTCTGGCGGAGCTTCTTCTGCTGGAGATTCAAGACTGCTGGATGTCGATGGCAGTGTTGTGTCCTCTGTTTGTACTAGGGTAATAAGCTATCGTGGGCGAGAGCGTGGGCTTCTAAGTTGTTACCCAGATGCTGATTTGGCAACAGCAAAGGATCTAATGGAGGCCAAGGGAATAAATCAGTTACCAGTGGTAAAGCGCGGAGCTCCTAAGAAGCATGGGAAACGAAGAGTCGTTGCTGTTCTCCACTATGATTTAATACGAAATTGTGTCAGAGAAGTCATAAATCACAGGAAATCAGTCTATCAACATGGCAAAGAGAAGAACATTGAGGAAATGTAA 2376 44.23 MLGGEYSDQNHLLRSTEDHVEDKDLEARNGDGDADGVQSHNCGSGSGRLAGGFMDLFKHLNRGSFSGRRHSFKRLDGNRINDSASPGGRGVDSHHLHSYNDNFNLRLHHAPTVNTAGEADSDDMLDDTAPPEWALLLIGCLVGLATGLCVAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVAGGVIVGMMHGLVEILYEIKQSSPSQRPGFDLLAGVFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYLMMENNSERIKIAFVAAGAAAGIASGFNAAVAGSFFAIETVLRSQRAENSPPFTTAMIILASVISSTVSNVLLGTQSAFTVPTYDLKSAAELPLYLILGMLCGVVSVAVTRLVSWFHKSFDLIKDRFSLPAIVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEVINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTKQSKEIEASENHGSSRGYSSLSPSERNIEITRRWNDASNNLELSTIENVSVCQTIDEDILMENMKVSQAMSKNFLKISLSTSLKDAIKYMNESQQNCALVVDDGDFLEGILTNGDLRRYLSKVSGGASSAGDSRLLDVDGSVVSSVCTRVISYRGRERGLLSCYPDADLATAKDLMEAKGINQLPVVKRGAPKKHGKRRVVAVLHYDLIRNCVREVINHRKSVYQHGKEKNIEEM 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 661404 668705 - Bpe023775.1 Bpe09g00096 108496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00096 791 CDD Voltage_gated_ClC 143 549 - -
Bpe09g00096 791 SUPERFAMILY CBS-domain pair 616 744 IPR046342 -
Bpe09g00096 791 MobiDBLite consensus disorder prediction 1 43 - -
Bpe09g00096 791 Pfam Voltage gated chloride channel 231 552 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe09g00096 791 Gene3D - 608 768 IPR046342 -
Bpe09g00096 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 4 788 - -
Bpe09g00096 791 SMART cbs_1 629 677 IPR000644 -
Bpe09g00096 791 SMART cbs_1 715 769 IPR000644 -
Bpe09g00096 791 SUPERFAMILY Clc chloride channel 131 556 IPR014743 -
Bpe09g00096 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 4 788 - -
Bpe09g00096 791 PRINTS Chloride channel signature 234 253 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe09g00096 791 PRINTS Chloride channel signature 286 305 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe09g00096 791 PRINTS Chloride channel signature 463 483 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe09g00096 791 PRINTS Chloride channel signature 504 520 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe09g00096 791 PRINTS Chloride channel signature 522 541 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe09g00096 791 ProSiteProfiles CBS domain profile. 626 684 IPR000644 -
Bpe09g00096 791 CDD CBS_pair_voltage-gated_CLC_euk_bac 626 766 - -
Bpe09g00096 791 MobiDBLite consensus disorder prediction 11 33 - -
Bpe09g00096 791 Pfam CBS domain 715 746 IPR000644 -
Bpe09g00096 791 Pfam CBS domain 622 677 IPR000644 -
Bpe09g00096 791 Gene3D Clc chloride channel 122 568 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00096 - - - csv:101212254 1070.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00734 Bpe09g00096 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00690 Bpe-Chr7:13530435 Bpe09g00096 Bpe-Chr9:661404 5.53E-135 transposed
Bpe03g00734 Bpe-Chr3:27433462 Bpe09g00096 Bpe-Chr9:661404 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00096 Bpe_Chr09 FPKM 0.071637 0.218508 0.214162 0.152134 1.0548 0.55582 0.854188 0.893195 0.739335 0.725407