Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00097 ATGGCCAATGACACCTCTGGATTATGCATAAAGCTCAAGATTCCGAAAAGTTCAAAACCATCTGAAAATCCAGAAGAAGGAGGTGGTGAAGGAGGAGGAGGAGAATCTTCGACAAAATTACGACCTTTTTCCCGATTCTGTCATGTCTGCAACAAGGGGTTCAGCTCCGGCAAAGCTTTGGGCGGCCATATGAGAATGCACGTTCAAGTCGTGAAAAAGGTCGGCGACGAGCTGTGTAATGATGGAGGTCAGAGCGGAAACCATGTTTGTTTTTTGTGCCGGAAGGTTTTCCCGTCGATGAAGTCTCTGTTTGGACATATGCGTTCTCATCCCGAAAGAACGTGGAGGGGAATTCAGCCGCCGCAGGTTGTGAATTGGCACAGCTCGTCGTCTACTCTTTCCGACGTAGACTCGCCGGAGTTTAAATTCGATGATCGTATCGATACAGCTGGTACGACAAGGGCTCCGGCCGCGGACTTGTCGAAGTCTCTTACGAATTGGTCGGTCACGGCTAAAAGAGGCCGGGCAAGCGTTTCTTCCGCTGCGGCTTCTGATTCGGGCCCTGCATTGGAGGATCCGCTGCAGGAGGCTGCTTCTAGTCTCATTCTCTTCGCCATTACTGCCGAAAGGACACTAAATACCTACCAAGATTCCGGCGATCCCCATTGTCTTTCCGGCAGGAAGAAGAGAAAAGTCACCCCAGAACACCCCGCCGGAAAATCTTATTCTTTCAAACCGGACTCGTCGGCGGAGGCTCAGCGTTTTTTCAGAAACGGTGAAGACGATTCGTTCCGACGTGAAAACAACTTGGGTAAGAAGATTTCAGGTGAATTAGACGATGAAAAACCAGAGTTTGAGATGGGAATAAAAGAGTTAAAGAGAAATAAAGGTAAAAAGACAACAAAAGAAGCTGTCGCCGGTGAAGCGAAGAAGACAACAGTGAAACAGCCGGAGAACTGTAACCTATACAGATGCAGTACTTGCAGTAGAACATTTTCGACCCACCAAGCTTTGGGTGGCCACAGGTCAGGCCATAACAAAGGGAAGAACATTTACGCCGTTGAAGCTCGTGTGAAAGAAGGAGAAAGTGAGATAGAAAGGACAATCTTGGATTTCGATCTCAACGAGCCGCCGTCTCTGAACGAAGAAGAAGAAGTAGAAATCGCTAAAAATGGCGATTTTCAGGTCAGTTGCAGAGAAGTTAGAAAACCAAACTAA 1218 47.87 MANDTSGLCIKLKIPKSSKPSENPEEGGGEGGGGESSTKLRPFSRFCHVCNKGFSSGKALGGHMRMHVQVVKKVGDELCNDGGQSGNHVCFLCRKVFPSMKSLFGHMRSHPERTWRGIQPPQVVNWHSSSSTLSDVDSPEFKFDDRIDTAGTTRAPAADLSKSLTNWSVTAKRGRASVSSAAASDSGPALEDPLQEAASSLILFAITAERTLNTYQDSGDPHCLSGRKKRKVTPEHPAGKSYSFKPDSSAEAQRFFRNGEDDSFRRENNLGKKISGELDDEKPEFEMGIKELKRNKGKKTTKEAVAGEAKKTTVKQPENCNLYRCSTCSRTFSTHQALGGHRSGHNKGKNIYAVEARVKEGESEIERTILDFDLNEPPSLNEEEEVEIAKNGDFQVSCREVRKPN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 671520 672737 - Bpe023776.1 Bpe09g00097 108497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00097 405 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Bpe09g00097 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Bpe09g00097 405 MobiDBLite consensus disorder prediction 13 37 - -
Bpe09g00097 405 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 6 384 - -
Bpe09g00097 405 MobiDBLite consensus disorder prediction 222 236 - -
Bpe09g00097 405 MobiDBLite consensus disorder prediction 215 281 - -
Bpe09g00097 405 Pfam C2H2-type zinc finger 47 67 - -
Bpe09g00097 405 Pfam C2H2-type zinc finger 88 112 - -
Bpe09g00097 405 Pfam C2H2-type zinc finger 323 346 - -
Bpe09g00097 405 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 6 384 IPR044653 GO:0003700
Bpe09g00097 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 323 350 IPR013087 -
Bpe09g00097 405 SUPERFAMILY beta-beta-alpha zinc fingers 88 345 IPR036236 -
Bpe09g00097 405 ProSitePatterns Zinc finger C2H2 type domain signature. 325 345 IPR013087 -
Bpe09g00097 405 Gene3D Classic Zinc Finger 43 110 - -
Bpe09g00097 405 SMART c2h2final6 88 110 IPR013087 -
Bpe09g00097 405 SMART c2h2final6 45 67 IPR013087 -
Bpe09g00097 405 SMART c2h2final6 323 345 IPR013087 -
Bpe09g00097 405 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Bpe09g00097 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 67 IPR013087 -
Bpe09g00097 405 MobiDBLite consensus disorder prediction 254 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00097 - - - fve:101314738 161.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00097 Bpe-Chr9:671520 Bpe07g00672 Bpe-Chr7:13407320 7.79E-11 dispersed
Bpe03g00735 Bpe-Chr3:27440956 Bpe09g00097 Bpe-Chr9:671520 1.51E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g786 . . . . Bpe09g00097 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00855 Blo10g00890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016229 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21850 PF13912 zf-C2H2_6 2.50E-07 CL0361 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00097 Bpe_Chr09 FPKM 8.575056 10.800489 12.397449 15.566199 7.246359 7.228303 8.238981 16.848375 17.003675 16.510136