Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00103 ATGATTTACACCTCCTTGTACATCTTTCTTTATGGTGACATGCTTTTGTCCAGTGTCGACATAGGTGGACTGGTTTATGTATGGAAAATTTTAGAGGGTCCAGATGAAGAAGGTACGCCACAAATTACTGGAAAATTAATAATTGCTGTTCATATTAAAGGAGAGGAGGACATTGTACATCCACGAATTTTTTTGGTTGTTGGCTTTGGGAAGTCTGTTTTGAGGATTGATACTAATAAAGTTGGGAAGTGCGAACAAACTGCCGAAGTTCCTCTTAAGGTTCCCATTGCAAAGTTAATAGATGGGTTGCAACTTGTTGGTAAACATGATAGAGAAGTCACCGGATTATCGATGTGTCAGTGGATGACTTCCCGTTTGGTTTCTTCCTCTGTGGATGGAACGATTAAGATTTGGGATGATCGCAAAGTTGCACCACTCGTGGTATTGAGACCACACGAAGGACAACCTGTTAATGCAGCTATGTTTTTAACTGCTCCTCATCGTCCAGGACACATCGTTCTTATAACAGCGGGCTCTCTTAACCGAGAAGTGAAGGTATGGTGTTCTGCAAGTGAGGAAGGGTGGCTACTGCCTAGTGATGTTGATTCATGGAAATGCAGCCAAACACTTGAACTGAAGAGTTCAGCTGAACATAAAGTTGAAGAGGCATTTTTCAATCAAATCGCAGCCTTGTCTCAAGCAGGTCTTCTTTTAATTGCTAATGCCAAGAAAAATGCCATTTATGCTGTACACATAGATTATGGCCCTAATCCTGCTACAACACGCATGGATTACATCGCAGAGTTTACTGTCACAATGCCGATTTTAAGTTTTACTGGAATGAGTGAAATATTAGATCGTAGTACACATATGGTTCAGGTTTATTGTGTCCAAACTCAAGCTATTCAGCAGTATGCTTTGAATTTATCCCAGTGCTTGCCACCACCTTTGGAGAATGTTGGGGCAGAGAGAGAGGAGTCAGATGTTTCTAATGATCCAACTAATGTTGATGGACTTGGATTGAGTTCACCTGCAAGTAAACCAATTGAGTTGCATTTAACTGGTTCTGCAACCAAAGCAACCACGTTGTTAAATGACGAGGATGTTTCTGCTGTAAGATATCCCATATCCTCTATTTCTCTTGAGGCATCATACAGTATAAATTTGGATTCTATACTGCTGACATCAGCATCAAGTTCGCCTCCTCTTCCTTTAAGCCCGAGGTTGTCTAGAAATTTGTCTGGTTTTAGAAGTTTAGCGACTAGCTTTGAGTCTATTGCTCAATTTAGTGACCAGTGTAGTGTCCAGCCAGTCAATGATTATCCTGTTTACAGACAAATGGACGCCATTCATTTGAATTCATTTGAAGCTTCGTCTGTAGGTGATGATTTGAGGAATATCGGGAAAAAAATTACTCAAGAGGATCTGTCTGTTGTTCCCAATCCTCCTATGATGTTTAGACATCCAACTCATTTAATCACTCCCTCTGAGATACTTAAGGGGGCTTCTTCCTCTGATGCCACTACTGTTGTTGAAGATAAAAATGAAGAAGAGTCAATTATTCAGGATGTGGTTGTAAATAATGATATGGGTGATGCTGAGTGGGAGGTCAAAGTGGTGGGTAAGATGAGGACTAATGAGAGTAGTGAATATGATTCTTGGGGTGAACCTCGGAACCTCTCGACAGAAAGTAAGGAGAAATTGTTCTGCTCACAGGCTTCAGATCTTGGTATTGAGGTGGCCAGAGAATGTTCAGCCACATCATCTGAAACTTACATAATGGATGGAGGTCAACCAGCTGTTTCAATGGATGCTTTGACCGTACTGTCTCATGCAAGTGAAGAAAACCAAGCCTCTACAAGAGAAATGTCTGAAAAAGTTCCAGATTCATCTCAATCCACAGCAATTCCACTGATGCCAACACCAAATGCTAAGGGGAAAAAGCACAAGGGTAAAAATTCTCAAGCATCTCGTCTGTCTTCTCCATCTCCAAGTGCTATCAATCTATCCAACGAACCTTGTTCAAGTATTCCTTCTGTTGAAACTGTTTTTCCCCAAATTCTGGCAATGCAAGATACACTGAATCAGCTAATGGCAACGCAAAAGGAATTGCAGAACCAGATACAGATGATAGTTGCTGTTCCAGTCACAAAAGAAGGTAGGAGACTGGAAACAGCTCTTGGGCGGAGCATGGAGAAGACTTTGAAAACCAACAATGATGGTTTGTGGGCTCGTATTCAGGAAGAAAATGTGAAAAATGACAAGTCGCTGCGGGATTGTACACAAAAGATAACAACTGTGGTAAATAGTTTTATAAATAAAGACTTACCTGCATTGTTAGACAAGACAGTGAAGAAGGAAATGGCTGGTATTGGACCAGCAGTGGTTCGCACCATCACTCCAGTTATTGAGAAAACAATATCTTCATCTATTACCGATTCCTTCCAGAGAGGTGTAAGTGATAATGCAGTGAATCAGCTAGAGAAATCTGTCAATTCAAAACTCGAAGGGACTGTTGCAAGGCAAATTCAGGCACAGTTTCAAACTTCTGGCAAGCAAGCTCTGCAGGAAGCTTTGAAATCAAATATGGAAGCTTCAGTGATTCCTGCTTTCGAGATGTCATGCAAATCAATGTTTGAGCAAGTTGATGCTACTTTCCAGAGGGGAATGGGTGAACATACCACTGCAGTTCAGCAACATGTCGAGTCTGCTTATTCTCCATTGGCAATGGTATTAAGGGATGCTATTAGTTCCGTATCAACCGTGAGTCAATCTTTGAGTGGAGAATTAGCTGATGGTCGACGAAAGCTGATAGCTCTAGCAACTGCCGGAGCAAATATCAGCTCGATAAATCCGTTGATTTCCAAACTGAGTAATGGGCATCTTGGTGTTCATGAGAAGGTCGAGGTTCCCTTGGATCCGACAAAAGAACTCTTAAGGCTTGTATCTGAACGAAAATATGAAGAGGCTTTCACCAGAGCTTTGCAGAGAAGTGATGTGTCCATTGTATCTTGGTTATGTGTTCAGGTTGATCTCCGTGGAATTTTAGCAATGGTGCCGGTCCCGTTGAGTCAAGGAATATTGCTTTCGCTTATGCAACAACTGGCTTTTGACATAAACAAGGAGAGTGGCCTGAAAATATCTTGGATGACAGATGTTGCGGCAGCCATAAACACGGGGGATCCGATGATTGCCATTCACGTTCGTCCAATCTTTGATCAAGTCTATCAGATACTGAACCATCAACGGAGCTTGGCTGGAGTAGCTCCGGCCGAACTATCCAGCATTCGGGTTCTTATGCATGTGATCAATTCTGTCCTGGTGACATGTAAA 3333 41.88 MIYTSLYIFLYGDMLLSSVDIGGLVYVWKILEGPDEEGTPQITGKLIIAVHIKGEEDIVHPRIFLVVGFGKSVLRIDTNKVGKCEQTAEVPLKVPIAKLIDGLQLVGKHDREVTGLSMCQWMTSRLVSSSVDGTIKIWDDRKVAPLVVLRPHEGQPVNAAMFLTAPHRPGHIVLITAGSLNREVKVWCSASEEGWLLPSDVDSWKCSQTLELKSSAEHKVEEAFFNQIAALSQAGLLLIANAKKNAIYAVHIDYGPNPATTRMDYIAEFTVTMPILSFTGMSEILDRSTHMVQVYCVQTQAIQQYALNLSQCLPPPLENVGAEREESDVSNDPTNVDGLGLSSPASKPIELHLTGSATKATTLLNDEDVSAVRYPISSISLEASYSINLDSILLTSASSSPPLPLSPRLSRNLSGFRSLATSFESIAQFSDQCSVQPVNDYPVYRQMDAIHLNSFEASSVGDDLRNIGKKITQEDLSVVPNPPMMFRHPTHLITPSEILKGASSSDATTVVEDKNEEESIIQDVVVNNDMGDAEWEVKVVGKMRTNESSEYDSWGEPRNLSTESKEKLFCSQASDLGIEVARECSATSSETYIMDGGQPAVSMDALTVLSHASEENQASTREMSEKVPDSSQSTAIPLMPTPNAKGKKHKGKNSQASRLSSPSPSAINLSNEPCSSIPSVETVFPQILAMQDTLNQLMATQKELQNQIQMIVAVPVTKEGRRLETALGRSMEKTLKTNNDGLWARIQEENVKNDKSLRDCTQKITTVVNSFINKDLPALLDKTVKKEMAGIGPAVVRTITPVIEKTISSSITDSFQRGVSDNAVNQLEKSVNSKLEGTVARQIQAQFQTSGKQALQEALKSNMEASVIPAFEMSCKSMFEQVDATFQRGMGEHTTAVQQHVESAYSPLAMVLRDAISSVSTVSQSLSGELADGRRKLIALATAGANISSINPLISKLSNGHLGVHEKVEVPLDPTKELLRLVSERKYEEAFTRALQRSDVSIVSWLCVQVDLRGILAMVPVPLSQGILLSLMQQLAFDINKESGLKISWMTDVAAAINTGDPMIAIHVRPIFDQVYQILNHQRSLAGVAPAELSSIRVLMHVINSVLVTCK 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 701788 707593 - Bpe026198 Bpe09g00103 108503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00103 1111 SMART WD40_4 142 188 IPR001680 GO:0005515
Bpe09g00103 1111 SMART WD40_4 102 139 IPR001680 GO:0005515
Bpe09g00103 1111 Gene3D - 1023 1110 IPR044938 -
Bpe09g00103 1111 SUPERFAMILY WD40 repeat-like 12 241 IPR036322 GO:0005515
Bpe09g00103 1111 Gene3D - 6 300 IPR015943 GO:0005515
Bpe09g00103 1111 Coils Coil 687 707 - -
Bpe09g00103 1111 MobiDBLite consensus disorder prediction 655 671 - -
Bpe09g00103 1111 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 14 1111 - -
Bpe09g00103 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 106 139 IPR001680 GO:0005515
Bpe09g00103 1111 MobiDBLite consensus disorder prediction 612 639 - -
Bpe09g00103 1111 MobiDBLite consensus disorder prediction 612 671 - -
Bpe09g00103 1111 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 14 1111 IPR045152 GO:0031087
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00103 K12616 EDC4; enhancer of mRNA-decapping protein 4 - csv:101211283 1418.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00741 Bpe-Chr3:27502768 Bpe09g00103 Bpe-Chr9:701788 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00103 Bpe_Chr09 FPKM 8.040159 8.032376 9.516557 8.301192 15.265489 14.70911 12.306542 9.406939 8.309679 11.557702