Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bpe09g00129	ATGGCGGACTCGGACAACGACTCTTTTGGACACACAGCGACGAACATTGAGCAATCCCCGAGGGAGCAAGACAGACTGTTGCCGATTGCTAACGTGAGCAGGATAATGAAGAAGGCCTTACCGGCAAACGCGAAGATCTCCAAAGACGCGAAGGAGACGGTTCAGGAGTGCGTTTCCGAATTCATCAGCTTCGTAACCGGCGAGGCGTCGGACAAGTGCCAGAGGGAGAAGAGGAAGACGATCAACGGCGACGATTTACTCTGGGCGATGACAACGCTAGGGTTTGAGAACTACATGGAGCCTCTGAAGATATACCTGCAGAGGTTTAGGGACATAGAAGGGGAGAAAACGGCTGTGGCGCGTGATAAAGACGGCAGTGGGAGGAGCGTAGGTGATCTCGGTGGTGGTGGGGCAGGTGGGCCATACGGAAGCGGAATGGGGGTGACGGTGATGGGCGGCCAGAATCAACTTCATCAGGGACACGTGTACAGTGGAAGCGAATTCCATCAGACGGCTGTGATTAGTGGACAAAGTCGGGGCGGGCCTGGTTATTCCGGTCACGGATCCAATACGGGTCGGTCCAGGTAG	588	55.44	MADSDNDSFGHTATNIEQSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFENYMEPLKIYLQRFRDIEGEKTAVARDKDGSGRSVGDLGGGGAGGPYGSGMGVTVMGGQNQLHQGHVYSGSEFHQTAVISGQSRGGPGYSGHGSNTGRSR	195

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
9	873594	874181	-	Bpe023804.1	Bpe09g00129	108529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bpe09g00129	195	MobiDBLite	consensus disorder prediction	1	24	-	-
	Bpe09g00129	195	ProSitePatterns	NF-YB/HAP3 subunit signature.	57	73	IPR003956	GO:0005634\|GO:0006355\|GO:0043565
	Bpe09g00129	195	Gene3D	Histone, subunit A	14	133	IPR009072	GO:0046982
	Bpe09g00129	195	PANTHER	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2	1	167	-	-
	Bpe09g00129	195	MobiDBLite	consensus disorder prediction	1	21	-	-
	Bpe09g00129	195	MobiDBLite	consensus disorder prediction	173	195	-	-
	Bpe09g00129	195	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	26	90	IPR003958	-
	Bpe09g00129	195	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	1	167	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
	Bpe09g00129	195	SUPERFAMILY	Histone-fold	23	133	IPR009072	GO:0046982
	Bpe09g00129	195	PRINTS	CCAAT-binding transcription factor subunit A signature	54	72	-	-
	Bpe09g00129	195	PRINTS	CCAAT-binding transcription factor subunit A signature	92	110	-	-
	Bpe09g00129	195	PRINTS	CCAAT-binding transcription factor subunit A signature	73	91	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bpe09g00129	Bpe11g00587	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bpe07g00646	Bpe-Chr7:13218659	Bpe09g00129	Bpe-Chr9:873594	7.24E-77	dispersed
	Bpe09g00129	Bpe-Chr9:873594	Bpe14g00737	Bpe-Chr14:5698458	1.52E-69	dispersed
	Bpe11g00587	Bpe-Chr11:4466290	Bpe09g00129	Bpe-Chr9:873594	1.29E-74	wgd
	Bpe03g00757	Bpe-Chr3:27614733	Bpe09g00129	Bpe-Chr9:873594	1.10E-43	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	21851	PF00808	CBFD_NFYB_HMF	3.40E-27	CL0012	Bpe	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bpe09g00129	K08065		-	qsu:112015911	248.44