Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00132 ATGGATTTATCAGAGTATACGAGAGTTGTGTTCAATCGAATACAGAAGATAGAACCGAAAGAAGTTCGAAAAATCATCGGCTATCTTCTTCTTCAAGATCACGGCGACGAACATATCGTCCGACTGGCCTGCGGGCCGGAGCAATCCATCCGTGAAGTCATTTACAAAGCTAAAATGGAGCTTCAAATTCCGGCCTCCTCCCCTCCAATATCGCCTTCTGTTCCGGTCTTATCTCCGTTGTCGCGGCAAACTTCCCAGCCGGTTTCGTCCTTGCCCTATTGGGAGCCGCTGATGAATCCGAATCCAGATTTTTCACCATCTGGGTTGAATGATTCTTTCTCTGAAATCCTAAACCAGACTCAGTTCTTGAGTTTAGACGATCAAATCGAACCATTCGGGTTGAGTATCTCGAATGATTCGTATTTTAGTTTGAGTTCGAGAAGGCGATTTGCGGATATGCCTATCAAAACTTGCCATTTTTTTAACAAGGGATTCTGCAGGCATGGAAATAGTTGCAAGTTCTTCCACGGCCAGTCAAATTCGGAGAATTTCTCTCAAATTTACGGGTATAACGAAGATCATATGTTCTTGCCCGGATCGCTCGAGAAGTTAGAGATTGAAATCGTCGATCTGTTGAAATCAAGGAAAGGAAATCCGATTTCTATCGCATCTTTGCCAATGATTTACTACGAACGATATGGAAAAGTTCTTCAGGCTGAAGGGTATCTCACCGAGAGCCAAAGGCACGGCAAAGCCGGTTATAGTTTGACGAAACTCCTTGCTCGGTTGAGAAATTCAATCCGTCTGATTGACCGACCTCATGGACAACATGCTGTGATCTTAACAGAGGATATCCCTACCTTCATAGAAAATCGAAATGAAAAGAATGATCCTGGCCCTATCATTAATGGATCGCGGCAGATATATCTCACATTTCCGGCTGACAGCACGTTTTCAGAAGACGATGTTTCAACTTACTTTGGGACTTTTGGTCCCGTTGAGGACGTTAGAATTCCATGCCAACAGAAACGAATGTTCGGATTCGTAACATTCGTCAGTGCCGATACGGTGAAGGTGATCTTGGCAAAGGGAAATCCTCATTACGTTTGTGGAGCTCGCGTTTTGGTGAAGCCGTATCGAGAAAAATCGAAGTTTATTGATCGGTATAACTCTTTCGACTCCGCATTACATCCCTTGGATTTTGTATAA 1209 43.84 MDLSEYTRVVFNRIQKIEPKEVRKIIGYLLLQDHGDEHIVRLACGPEQSIREVIYKAKMELQIPASSPPISPSVPVLSPLSRQTSQPVSSLPYWEPLMNPNPDFSPSGLNDSFSEILNQTQFLSLDDQIEPFGLSISNDSYFSLSSRRRFADMPIKTCHFFNKGFCRHGNSCKFFHGQSNSENFSQIYGYNEDHMFLPGSLEKLEIEIVDLLKSRKGNPISIASLPMIYYERYGKVLQAEGYLTESQRHGKAGYSLTKLLARLRNSIRLIDRPHGQHAVILTEDIPTFIENRNEKNDPGPIINGSRQIYLTFPADSTFSEDDVSTYFGTFGPVEDVRIPCQQKRMFGFVTFVSADTVKVILAKGNPHYVCGARVLVKPYREKSKFIDRYNSFDSALHPLDFV 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 898331 899687 + Bpe023807.1 Bpe09g00132 108532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00132 402 SUPERFAMILY RNA-binding domain, RBD 317 390 IPR035979 GO:0003676
Bpe09g00132 402 SUPERFAMILY CCCH zinc finger 154 177 IPR036855 GO:0046872
Bpe09g00132 402 SMART rrm1_1 307 377 IPR000504 GO:0003723
Bpe09g00132 402 Pfam OST-HTH/LOTUS domain 200 278 IPR025605 -
Bpe09g00132 402 ProSiteProfiles Zinc finger C3H1-type profile. 152 179 IPR000571 GO:0046872
Bpe09g00132 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 365 IPR000504 GO:0003723
Bpe09g00132 402 ProSiteProfiles OST-type HTH domain profile. 200 283 IPR025605 -
Bpe09g00132 402 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 390 - -
Bpe09g00132 402 CDD RRM_AtC3H46_like 308 377 IPR034365 -
Bpe09g00132 402 Gene3D - 311 385 IPR012677 -
Bpe09g00132 402 Gene3D - 151 215 - -
Bpe09g00132 402 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 390 - -
Bpe09g00132 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 381 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00132 - - - jre:108985070 523.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00132 Bpe-Chr9:898331 Bpe15g00963 Bpe-Chr15:19275813 9.17E-13 dispersed
Bpe09g00132 Bpe-Chr9:898331 Bpe01g00323 Bpe-Chr1:2002392 7.68E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g619 . . . . Bpe09g00132 . . Bma13g01110 Cmo16g00984 . . . . . . . . . . . . . . . Cla10g00430 Cam10g0428 Cec10g0450 Cco10g0440 Clacu10g0435 Cmu10g1266 Cre10g0683 . . Cone14ag1209 Cone15ag1226 . Csa03g00438 . Cme06g02784 . . . Bda12g00954 . . . . Sed08g2938 . . . Cma16g00946 . Car16g00909 Cpe14g00769 . Bhi11g00494 Tan01g1811 . . . . . . . . . . . . Lsi05g00520 . Chy06g01879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002118 2 2 1 2 1 1 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 2 2 1 11 6 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00132 Bpe_Chr09 FPKM 8.091691 9.845102 12.21658 10.949113 32.294399 32.912098 35.865372 16.421782 17.968369 15.013187