Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00149 ATGGATGTCGTGGTGGTTGGTGAAGGTACCGACTCGGGTGCAGCTCAATCGGGCGACAAGAGGCCGGTTGAGAATGTCGGAGACGATGAAGAGGGTGGATCTCGGTTGAGCAAGAAGGCGAAGAGCAGCGGTGAATTGGACAGAGAGCTTAAGAGGGTGGCGACGATTGTGCTTGCATTGTCGACGATGGCTACTATCCGTGCTGGGAAAAAACCGAGTGAGGCTGAGGTTGGTTTGATGATGGAGGCGAGGGCTAAACTTGCGGAGATATGTGAAGATTTTGCACCGAAGGATATCATTGAGAAAGATGGAATTGTTGCTGTAATTGAGGATTTGGGTCTTAATGGGAAAGATAAAGATCAGACGCTTGGGTTTAGAGGATCTCGGCTGACGATAGTGGAGAAGTTGTCTCAGGCAAAAAGGAAGATGGAAGAATCCAAGAAATTTGTTGCCCCTACAGCCACATACACATCCCATCCTTTGCCAACCAGTTTTTCTATAACAGCTGAAAACCGTGGGATACCACCTACCCTTCGAACATTTCCGGCAGATAAGCCCAGTCATGTACAAATTTCTTCCGTAGGCATTCCCACTTCTTTGCCTACAGGTGTTGTTTCTGCTACTATTTCTACATCTTCACAGCCTCACATCGCTTCAAATGAAGGCAAACCATCAATTGTTCCCGGTGGATTCACTATAAATCATCAAGGAAGGAATACTCCCTCAGTGCCTAGATCTGATAGAACACCTAACGGGACCTATTTCTATAAACCTATCCATTCTGCCATTTATTCATTCGGATATCTGCTGACAGCATCTCCACCTGCTTGGCCTGTGCAAATGCAATCATTGTCATCAAGTAAAACTGGATCAGAGCAGAAGTTGGCAAATAACATTTCTTCCACTGCTCAGGGAGCTTCAGATGTGAGCATGTCAAGGCTGGCTCCTCAAGCTGCAAGAGATCAGAGCCTAAGACCACTTGGTACTCAAACAGTTCCTGGAAATTTACCGGGGTTGCACCATACATTGCAGGGAGTAAACTTTGCTCAAGCTCCTTCACTTCTAAACAATCACAGTGAAATTGCAAAAATTGTTCAGAAGTTATTACAACTGCAGCTTCCTGATCATCCCACATGGACTCCTCCGTCAAGGGATTACATGAATAAGACCGTCACTTGTCAAAGTTGTCAGATAGCCATAACTGATGTTGACAGTGTCCTTGTATGTGATGCCTGTGAGAAAGGATATCACTTGAAGTGTGTACAGTCACTCACTCAAAGGGGAATACCCAGAGGCGAGTGGCATTGCCGCCGGTGTTTGGCATTAAGCAATGGGAAGCCTTTGCCTCCTAAATATGGTCGTGTGATGAGGAGTAATCCACCACCAAAGGTGACCACTAATCCCTCTGGAGTTCCATCATCTCCAGAGAAAAAGGGTGGAATAATAGATGCAAAGATTAATCAGCAGGAAGCAGGAGGTCATGGAGGCCATGATATGCAAACTCGTCAAGCCACTAGAGTAGGCAGCGACTGTGTTGAATCAATATCTGTTTCCAAGACACTGAATGTAATAACAATGGACGGGAAGATTTTTCCAGATACTACTAAAGATGTAGGTGAGCAATTAAATTCTGTAACATCTCCAAATAATCTAGGAGAACTCTTAGAGCCAGGTTGTAGCTTCCCCTCTGTTGCATTCTCAAGTGAAACATCTGCTCAACATGTAAAGAATTCTGAACCACCAAACGACAGGGAGAGGTTGTCTGTATTCAATACTGAGCTTCCTTCAAAATTACCTGACTGGGTTAGTGAAACATGTGACGATCTCCGAACTGTAGATAATCCCGGCAATTTTAATGGAACAAAGCAATCTCACTGCCCAGAAATTTCATCTGAGAAATGTCATAATGACCAATGTTCTGTGGAAGATCCTGAGAAAGTCAACTTGACAGGAAGTTCTGAGGGAGCTGAGAAAGTCAACATGGCAGGAAGTTCTGAGGACACTTCGATTCACACAATTAAGCAAGACGGCAAAGAAATTCCACACGCTAGCTCTGTTGGCGGAGAGTCATCTGTGTTTTCTGCAGATGGATTGCATGGGGTGGAATGGATGGGCAATGCGGACATTGCAGAGGGAAAAACATTTTATCAGTCTTGCAGCATTGGTGGAGTAACATATAAAGTTGGGGATCATGCTCTTTTTCATTCCACCAATGGGAAGTTGGTACCCTCTAAGCTTCAGGCAAGCATATTATCATGCACTTCAATGTGGGAGGATAGCAATGCTGGGTTAAAGTCTGTTATTATTTACCAGTGTTACTTTCCCGATGACTTGCCGGAGAAAGTAGCTCGTCCTTGCCTCCCTGAGAGCAATGAGGTCTATGAATCTAATCATGTTAGCACTGTAATGGCTAGCTTGATTCAAGGGCCATGTCAAGTTTTGTCTCTTCCCAAGTTTGAAGAAGAGAACGAAAGACGAAAGCAATCCGGGCTTCAAATAAATAATGGAGTGCATCCAGTTTTTCTTTGCAAGTATGGATTGAATCTTCATTTTTTGTTTCTCAGTACAACTTTCTCTGACTTCCTTCTCGAACAGTTATTTGTTACCCTTGCTCTTTTGTTATGGTATGGAACCACTTCAAAAATGCCGTCTTCTGCATGA 2661 44.19 MDVVVVGEGTDSGAAQSGDKRPVENVGDDEEGGSRLSKKAKSSGELDRELKRVATIVLALSTMATIRAGKKPSEAEVGLMMEARAKLAEICEDFAPKDIIEKDGIVAVIEDLGLNGKDKDQTLGFRGSRLTIVEKLSQAKRKMEESKKFVAPTATYTSHPLPTSFSITAENRGIPPTLRTFPADKPSHVQISSVGIPTSLPTGVVSATISTSSQPHIASNEGKPSIVPGGFTINHQGRNTPSVPRSDRTPNGTYFYKPIHSAIYSFGYLLTASPPAWPVQMQSLSSSKTGSEQKLANNISSTAQGASDVSMSRLAPQAARDQSLRPLGTQTVPGNLPGLHHTLQGVNFAQAPSLLNNHSEIAKIVQKLLQLQLPDHPTWTPPSRDYMNKTVTCQSCQIAITDVDSVLVCDACEKGYHLKCVQSLTQRGIPRGEWHCRRCLALSNGKPLPPKYGRVMRSNPPPKVTTNPSGVPSSPEKKGGIIDAKINQQEAGGHGGHDMQTRQATRVGSDCVESISVSKTLNVITMDGKIFPDTTKDVGEQLNSVTSPNNLGELLEPGCSFPSVAFSSETSAQHVKNSEPPNDRERLSVFNTELPSKLPDWVSETCDDLRTVDNPGNFNGTKQSHCPEISSEKCHNDQCSVEDPEKVNLTGSSEGAEKVNMAGSSEDTSIHTIKQDGKEIPHASSVGGESSVFSADGLHGVEWMGNADIAEGKTFYQSCSIGGVTYKVGDHALFHSTNGKLVPSKLQASILSCTSMWEDSNAGLKSVIIYQCYFPDDLPEKVARPCLPESNEVYESNHVSTVMASLIQGPCQVLSLPKFEEENERRKQSGLQINNGVHPVFLCKYGLNLHFLFLSTTFSDFLLEQLFVTLALLLWYGTTSKMPSSA 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1017606 1021729 + Bpe023822.1 Bpe09g00149 108549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00149 886 CDD BAH 723 850 - -
Bpe09g00149 886 ProSitePatterns Zinc finger PHD-type signature. 393 439 IPR019786 -
Bpe09g00149 886 ProSiteProfiles Zinc finger PHD-type profile. 390 442 IPR019787 -
Bpe09g00149 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 447 IPR013083 -
Bpe09g00149 886 MobiDBLite consensus disorder prediction 649 668 - -
Bpe09g00149 886 MobiDBLite consensus disorder prediction 1 43 - -
Bpe09g00149 886 MobiDBLite consensus disorder prediction 450 479 - -
Bpe09g00149 886 SMART PHD_3 392 440 IPR001965 -
Bpe09g00149 886 Pfam PHD-finger 393 440 IPR019787 -
Bpe09g00149 886 SUPERFAMILY FYVE/PHD zinc finger 383 449 IPR011011 -
Bpe09g00149 886 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 846 - -
Bpe09g00149 886 MobiDBLite consensus disorder prediction 22 43 - -
Bpe09g00149 886 Gene3D - 703 851 IPR043151 -
Bpe09g00149 886 ProSiteProfiles BAH domain profile. 724 858 IPR001025 GO:0003682
Bpe09g00149 886 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 846 - -
Bpe09g00149 886 CDD PHD_SF 392 439 - -
Bpe09g00149 886 Pfam BAH domain 724 845 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00149 - - - jre:108984666 726.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00149 Bpe-Chr9:1017606 Bpe15g00400 Bpe-Chr15:15512866 9.17E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g579 . . . . Bpe09g00149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00915 . Car16g00888 Cpe14g00740 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21854 PF01426 BAH 6.60E-08 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00149 Bpe_Chr09 FPKM 6.200517 7.268655 4.995194 6.133186 5.553627 6.195091 6.357797 6.218665 6.371667 5.990836