Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00160 ATGGAATCGGATGGAACAGAAGCTGCTAGAATACTTCATGAAATCGAAACGTTAAAGTTCTCGAAGCTCGATATTGAGCGTCGGATTGCGGCTCTCGAAGGACAGCTCCGGGAGATGAAAGTTCAGCCGGAAAACGATGTTTCAAAGAGGTCTTCTACTCCGGTGTCCACGTTCGAATCCGACTTGCCTCAGAGATTTCCACCTGAAATGATTTACAGATACAGTCGACACCTCTTGCTTCCCTCTTTCGGCCTCCAAGCTCAATCGAAGCTGTTGAACTCTTCGATACTAGTAATTGGGGCGGGAGGACTAGGTTCGCCAGCTCTGTTATACCTTGCAGCATGTGGTGTCGGTCGCTTGGGCATTGTTGATCATGATGTGGTTGAGCTCAATAACATGCATCGCCAGATTATCCATACTGAAGCTTATATTGGTCAGTCAAAAGTGAAATCTGCTGCTGCTACTTGCCACTCGATCAACTCCACGGTTCAGATTGCGGAACATATTGAAGCTCTTCGGATATCAAATGCTTTGGAGATCATGAGCAAATATGATATTGTAGTAGATGCTACAGATAATGCTCCAAGCAGGTACATGATTAGTGATTGCTGTGTGGTGTTAGGAAAGCCTCTCGTCTCTGGTGCAGCCTTGGGAATGGAGGGGCAGCTCACAGTATACAATTATAATGGTGGCCCGTGTTATCGATGTTTATTTCCCACTCCACCACCAACAACAGCATGTCAAAGATGTGCAGACAGTGGCGTCTTAGGTGTTGTTCCTGGCATCATTGGCTGTCTCCAAGCCCTGGAAGCTATTAAAATAGCTAGCGAAGTGGGTGAACCACTTACAGGAAGGATGCTTCTGCTTGATGCATTATCGGCTAGGATCCGTATTGTCAAGATTCGAGGGAAGTCGTTGCAATGTGAGGTTTGTGGAGAAAATGCTCAATTCAATGCACAGAAATTCAGAGAATTTGATTATGAGAAGTTCACCCAGTCCCCTCTATCTACGACTCCACCGAAGTTAAAGCTGCTTGAGGCAGATTCAAGAATAAGCAGCAAAGAGTACAAGGAGAGAATCATTAGTGGCGAGGCTCATGTTTTGGTGGACGTTCGACCAAATCACCATTTCAAGATTGTTTCTCTGCCAAACTCCATAAACATCCCTCTTTCAAGCTTGGAGGCTCGATTATCAGAAATATCGTCGGCTTTGAAGGAAGAGGAAGAGCGGCACTGCAGTACAAATTCTGGTTGTCATGCTCAATTATACTTGGTTTGTAGGCGAGGCAATGATTCTCAGAGGGCCGTTGAGTACCTCCACAAGAAGGGGTTTGATTCAGCCAAGGATATCATTGGTGGTTTGGAAGGCTGGTCTCGAGAGGTAGATCCAAGCTTCCCTACGTATTAG 1407 45.91 MESDGTEAARILHEIETLKFSKLDIERRIAALEGQLREMKVQPENDVSKRSSTPVSTFESDLPQRFPPEMIYRYSRHLLLPSFGLQAQSKLLNSSILVIGAGGLGSPALLYLAACGVGRLGIVDHDVVELNNMHRQIIHTEAYIGQSKVKSAAATCHSINSTVQIAEHIEALRISNALEIMSKYDIVVDATDNAPSRYMISDCCVVLGKPLVSGAALGMEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCADSGVLGVVPGIIGCLQALEAIKIASEVGEPLTGRMLLLDALSARIRIVKIRGKSLQCEVCGENAQFNAQKFREFDYEKFTQSPLSTTPPKLKLLEADSRISSKEYKERIISGEAHVLVDVRPNHHFKIVSLPNSINIPLSSLEARLSEISSALKEEEERHCSTNSGCHAQLYLVCRRGNDSQRAVEYLHKKGFDSAKDIIGGLEGWSREVDPSFPTY 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1074358 1077858 + Bpe023833.1 Bpe09g00160 108560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00160 468 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 32 468 IPR028885 GO:0002143|GO:0004792|GO:0005829
Bpe09g00160 468 Pfam ThiF family 74 309 IPR000594 -
Bpe09g00160 468 Gene3D - 349 468 IPR036873 -
Bpe09g00160 468 Coils Coil 390 410 - -
Bpe09g00160 468 Pfam Rhodanese-like domain 354 459 IPR001763 -
Bpe09g00160 468 ProSiteProfiles Rhodanese domain profile. 362 466 IPR001763 -
Bpe09g00160 468 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 71 435 IPR035985 GO:0008641
Bpe09g00160 468 PANTHER ADENYLYLTRANSFERASE AND SULFURTRANSFERASE MOCS3 6 453 - -
Bpe09g00160 468 SMART rhod_4 352 463 IPR001763 -
Bpe09g00160 468 Coils Coil 22 42 - -
Bpe09g00160 468 CDD ThiF_MoeB_HesA_family 73 301 - -
Bpe09g00160 468 Gene3D - 69 318 - -
Bpe09g00160 468 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 6 453 IPR045886 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00160 K11996 MOCS3, UBA4; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] - zju:107432745 717.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00062 Bpe-Chr8:331882 Bpe09g00160 Bpe-Chr9:1074358 2.22E-14 dispersed
Bpe09g00160 Bpe-Chr9:1074358 Bpe14g01316 Bpe-Chr14:10153527 5.16E-12 dispersed
Bpe09g00160 Bpe-Chr9:1074358 Bpe01g00074 Bpe-Chr1:474969 3.39E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00555 . 36 309 Sulfurtransferasese/Rhodanese AT5G23060 62.6 1.9e-87 319.3
Bpe13g00981 . 444 816 Sulfurtransferasese/Rhodanese AT4G01050 59.0 5.0e-117 418.3
Bpe02g01838 . 6 615 Sulfurtransferasese/Rhodanese AT1G09280 63.6 2.3e-222 768.5
Bpe04g01938 . 100 474 Sulfurtransferasese/Rhodanese AT2G40760 70.8 1.1e-150 530.0
Bpe12g00626 . 81 441 Sulfurtransferasese/Rhodanese AT1G17850 64.5 2.7e-138 488.8
Bpe04g00562 . 34 229 Sulfurtransferasese/Rhodanese AT2G42220 75.0 9.8e-84 306.6
Bpe04g01274 . 22 221 Sulfurtransferasese/Rhodanese AT3G08920 56.7 2.7e-64 241.9
Bpe07g00865 CCT,ECH 122 332 Sulfurtransferasese/Rhodanese AT4G24750 64.5 5.0e-77 284.6
Bpe08g00293 . 17 295 Sulfurtransferasese/Rhodanese AT5G19370 56.5 6.9e-82 300.8
Bpe09g00160 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 73.3 2.8e-154 541.6
Bpe07g01026 . 37 251 Sulfurtransferasese/Rhodanese AT4G27700 68.8 3.5e-78 288.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009966 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00160 Bpe_Chr09 FPKM 3.593407 3.138476 5.643046 5.9579 9.368531 5.131617 4.456177 8.669583 10.642019 8.350327