Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00164 ATGGATTTAGCGGTGATCGGCCGACATGCTCTGCTCTTCGACGACGATGCGGCCGCCGCTTTTATTAACTCGAGCGAAGCGCTTGTCGAGTGGAATTCGCTCTCCATAGATCGCTATGATGTGCGGCACCTCCTTTCAGATCTTCCTCCTCGCAAAAGAAGACAATCTTCACCGCCTCATCCTGATGCCTCTCTCTTATCGGAGCTTGATCACGAGCGTTATCTTGATTTGCCGTCTCCGTCGGATGTTGAGGAACAAGGTAGATTGAGAATTATGTTACCCCCAAATGGTGGTGGCTTTCACGCTGTTTCATTTTCATATGGAAACCCTGATGAATCAAACGACCTTAAAAGTAATGATGCTGATTCTGGTTATAAACCACCTTTCCCGGTGCCAGAAAGTTTATCTCAGAACCTGCCTCCAACAGAAAAAGTACATCAGATTATTGCCAGAACTGCCTTATTTGTTAAAAAACACGGTGGCCAGTCAGAGATTGTTTTGCGGGTAAAACAAGGAGACAACCCTGCTTTTGGGTTTTTGATGCCTGACCATCATCTTCATGTATACTTTAGGTTTCTTGTTGAACATCATGAACTTCTAACATGTGACGCAAATGAAAAATTGACAAAAGAGAAGGATGCTAGTAGTGGTGCTTTATCTTTGCTTGGCTCTGTGTATGGGACTGGTGAGGATGAAGATGTTGCTGAGGAAAGTTATAACACCCAAATAAACAAGTCTGAAGATGCTGTTGATGTTAGTAATTCACTTATTTCTCAACAATCGGAACAGACACAATCTTCAACAAATAATGCTGGGAAGCCTGTGGTGCAGTCTAAGAAACCAGTTTTTTCTTTGAAGGAAAATGACCTGAACAACAAACAGACTTGTGCAAGTTCTGTTAAAAGTAGAAGTGCAATTAAAAGCAGCACTGCCTCTTTACTTAGTCCTTCAATTGACAAGTCTGAACCTTCTGCTTTCCTGGGCATATCTAAAGTTGAACTACCTATTTTGGAGCCTCCATCTGACATGAAGAAAGTGGTTGATAAGATAGTTGAGTTCATTCTAAGGAATGGAAGACAATTTGAGGCAGTTCTTGCTGAGCAGGATCGAAGTCATGGAAGATTTCCGTTTCTTCTGCCATCTAACCATTATCATCCTTACTATTTAAACATCCTTAAAAAGGCGCAAGAGTCTAAGCTTTCCAGCAAGGGTCTTATTTCGGAAAAACATGAGTCTTTTGGACGTGGAATGGACAAGAAAAGTGCATTAAGAGAAAAAGTTGATTCATCTTTGAAATCAACCGATGATGATATACCATGTGACTATGAAAGAAAGGACAAGTTTAAGATGGTGATTGGAAAATCAAAAAAGGAAGGTCTAGATGGACCTTCAAAACCCAACCTGCCATCAGCCGGATTCACTGTAGATGCAGCAGCTGCAGCTGCTATTCTTCAGGCTGCCACACGGGGAATTAAGAATTCTAGTTTAGAAAATTTTTCTAAGACATCATTAATAGGAAGTGGTCATACTTCAAACATCGGGAGCCTCTACTCATATCAACCTGGATCTTCTATGCTTAAATTGGATCGGAAAGGAGAATCTGGTGTGCCTGTCTCAGTTAGAAAAGCTATTGCAGAGACGAGGAAGTTTGCTGGTGTTAGTGAGGCTGACTCTTCTGAACATGAGAAGAATTTGAAGAAGGCGGAAAGATTGAAACGTGCAAAGATTTTTGCAACAATGATAAAAGGTGGTTCTGTACCACTGAAAACAGAACCAGGAAGGGGGCTTTCAGTCGAACCTCTTGGCTTGGGGACTTCTACACCAGTTGCTGAGGCTACAGGCCTTGTGGGTAAAGAAAGAGAAGGAAGTTCTGATCCGTTCAAGTCTTCAAAGTTTGAAAAGAACAATTCCGACTCAAATAATGAACGGAGATCAAAGAGGAGCTATCGATCTAGAGCTGATAGACCTGGTAGTGATATGGAAGGAAGTGAGAAGGAAGAAGAAGAAGAAAAAAGGGAACATAAACACTCTAGGAAGAAGCACCGTTCTCATCGTTCTTCACACAAGCACAGGAAAAGGCACTCCTCCAAGCATAATGCGTCGTCAGATTGTGAACTTCAGGATAAGCAGAGGGACTCATCCGATGATAATCATGGACGTTCTAAATCCAGACGTCGGAATAAGAACACCAAGGATGAGAAACAGTCTAAACACGAGAGCTCCTCCGAAGAGGAACGATGGAATTCCCGAAGTAAGCACAAGAATTATGGGTCTTCTGGCGATGAAAGTCCGCATCGAAGAAGGGCCCCGAAGCGAAAGACGATGCACTCTATAGATTTGGAGGAGGGAGAGATAAATCCATCAAAGGCTAGCAAAATCAAGACTGGCAGCTGGGATCCTTCCGATAGATTTGCAAAATTCAATCATGGTATACGGGCTCAATCAGAGCCGTCAAATACCGTTGAAGCGCCCGAAGATCTTAAAGCCAAAATTCGAGCAATGCTTATAGCAACATTGTGA 2520 42.58 MDLAVIGRHALLFDDDAAAAFINSSEALVEWNSLSIDRYDVRHLLSDLPPRKRRQSSPPHPDASLLSELDHERYLDLPSPSDVEEQGRLRIMLPPNGGGFHAVSFSYGNPDESNDLKSNDADSGYKPPFPVPESLSQNLPPTEKVHQIIARTALFVKKHGGQSEIVLRVKQGDNPAFGFLMPDHHLHVYFRFLVEHHELLTCDANEKLTKEKDASSGALSLLGSVYGTGEDEDVAEESYNTQINKSEDAVDVSNSLISQQSEQTQSSTNNAGKPVVQSKKPVFSLKENDLNNKQTCASSVKSRSAIKSSTASLLSPSIDKSEPSAFLGISKVELPILEPPSDMKKVVDKIVEFILRNGRQFEAVLAEQDRSHGRFPFLLPSNHYHPYYLNILKKAQESKLSSKGLISEKHESFGRGMDKKSALREKVDSSLKSTDDDIPCDYERKDKFKMVIGKSKKEGLDGPSKPNLPSAGFTVDAAAAAAILQAATRGIKNSSLENFSKTSLIGSGHTSNIGSLYSYQPGSSMLKLDRKGESGVPVSVRKAIAETRKFAGVSEADSSEHEKNLKKAERLKRAKIFATMIKGGSVPLKTEPGRGLSVEPLGLGTSTPVAEATGLVGKEREGSSDPFKSSKFEKNNSDSNNERRSKRSYRSRADRPGSDMEGSEKEEEEEKREHKHSRKKHRSHRSSHKHRKRHSSKHNASSDCELQDKQRDSSDDNHGRSKSRRRNKNTKDEKQSKHESSSEEERWNSRSKHKNYGSSGDESPHRRRAPKRKTMHSIDLEEGEINPSKASKIKTGSWDPSDRFAKFNHGIRAQSEPSNTVEAPEDLKAKIRAMLIATL 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1097108 1101453 + Bpe023836.1 Bpe09g00164 108564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00164 839 Pfam Alternative splicing regulator 2 85 IPR019147 -
Bpe09g00164 839 Gene3D Surp module 141 197 IPR035967 GO:0003723|GO:0006396
Bpe09g00164 839 SUPERFAMILY Surp module (SWAP domain) 124 195 IPR035967 GO:0003723|GO:0006396
Bpe09g00164 839 MobiDBLite consensus disorder prediction 250 276 - -
Bpe09g00164 839 SMART DRY_EERY_2 1 111 IPR019147 -
Bpe09g00164 839 PANTHER SPLICING FACTOR, SUPPRESSOR OF WHITE-APRICOT HOMOLOG 1 838 - -
Bpe09g00164 839 MobiDBLite consensus disorder prediction 675 697 - -
Bpe09g00164 839 MobiDBLite consensus disorder prediction 621 674 - -
Bpe09g00164 839 ProSiteProfiles SURP motif repeat profile. 148 190 IPR000061 GO:0003723|GO:0006396
Bpe09g00164 839 SMART surpneu2 146 199 IPR000061 GO:0003723|GO:0006396
Bpe09g00164 839 SMART surpneu2 344 397 IPR000061 GO:0003723|GO:0006396
Bpe09g00164 839 MobiDBLite consensus disorder prediction 587 801 - -
Bpe09g00164 839 MobiDBLite consensus disorder prediction 250 275 - -
Bpe09g00164 839 MobiDBLite consensus disorder prediction 49 69 - -
Bpe09g00164 839 Gene3D Surp module 332 403 IPR035967 GO:0003723|GO:0006396
Bpe09g00164 839 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 1 838 IPR040397 -
Bpe09g00164 839 SUPERFAMILY Surp module (SWAP domain) 334 392 IPR035967 GO:0003723|GO:0006396
Bpe09g00164 839 ProSiteProfiles SURP motif repeat profile. 346 388 IPR000061 GO:0003723|GO:0006396
Bpe09g00164 839 MobiDBLite consensus disorder prediction 698 788 - -
Bpe09g00164 839 Pfam Surp module 147 195 IPR000061 GO:0003723|GO:0006396
Bpe09g00164 839 Pfam Surp module 345 392 IPR000061 GO:0003723|GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00164 - - - qsu:112013017 749.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00164 Bpe-Chr9:1097108 Bpe06g00608 Bpe-Chr6:16895561 9.89E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g541 . . . . Bpe09g00164 . . Bma13g01069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00923 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016228 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00164 Bpe_Chr09 FPKM 38.896637 42.691059 32.197311 29.818928 59.162327 56.419556 59.216957 27.984804 29.157066 26.594484