Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00165 ATGAAGGCAGAAATGGGGAGAATTAATATGGAAAATAATCGTTTGAGATGTATGCTTAATCAGATGAGTAACGACTACTACAACCTTCAGATGCAGCTTGTTTCTGTCACGCAAAGGCAACAAATTAATCAAGATCATCATAAGATGGGTAGTGAACGATCCGAGGAAGATGATGAGAACAATGGAGGAAAATTCAAATTTCCTCGAAATTTGATGGATTTGGGTCATCAAAATGACGATCAACTTTCAAATTCTTCTTCAGAAACGAAGTCGTCTAATTTTTTTGAAACTCCAAAGAAAAATCGTATAGCTTTTGGAGTTCACAACACAAGCGACAAATGTCTGGAAAAAGTGGATAATGATAAGAGAGAGAGTATAACTAGTGAGAGAAATGGAAGAAAGGAAAGCTCAAACCAAGCTGCTGTTTCATCGCGACCGCCTGACAATGTGGACCGGCCGTCGGAAACTTTGACGACGATAAAAAAAGCTCGAGTATCAGTCCGAACACGATCCGAAATGTCCATGGTATCAGATGGGTGTCAATGGAGGAAGTATGGACAGAAAATGGCGAAAGGGAATCCATGTCCTCGAGCTTACTATCGTTGTACAATGGGAGTTAATTGCCCAGTTCGCAAACAGGTACAAAGAAATGCAGAAGATCAAACAATTCTCATAACCACGTATGAAGGACAACACGACCATCCTCTTCCTCAAGCTGCGATGAGTATGGCCACAACCACGTCGGCCGCCGTTTCGATGCTTCTCTCAGGTCCGATGTCTAGACAGGACTGCTCAATAAGAAACACAGAATCACTCCCTCTATCGATGCTTAATTTCTCACCAACTTTAGCTACTCTTTCAGCTTCAGCCCCATTTCCTACTGTCACAATAGATCTCACTAACAGGCCACAAGATGTTGCCCAGAATTCTGCATCTTTCCAGGAAAATGTTGCCGGTTTTCTCGGCCACCAGCCGGGATTTTCGGGTTCTGAAATGCCTGAATCTGGACACGATCAGAGTCAAATTCCTTCAATGGCTGATGCAGTAAGCGCAGCCACAGCTGCCATTACAGAAGACCCCAATTTGAGGGCAGCTCTTGTGGGAGCCATTGCTTCCGTCTTTGGAAGAACTCAGCTGGGCAGGAATATTAGCAACTCGACAAACAGCGACGGATAA 1176 43.79 MKAEMGRINMENNRLRCMLNQMSNDYYNLQMQLVSVTQRQQINQDHHKMGSERSEEDDENNGGKFKFPRNLMDLGHQNDDQLSNSSSETKSSNFFETPKKNRIAFGVHNTSDKCLEKVDNDKRESITSERNGRKESSNQAAVSSRPPDNVDRPSETLTTIKKARVSVRTRSEMSMVSDGCQWRKYGQKMAKGNPCPRAYYRCTMGVNCPVRKQVQRNAEDQTILITTYEGQHDHPLPQAAMSMATTTSAAVSMLLSGPMSRQDCSIRNTESLPLSMLNFSPTLATLSASAPFPTVTIDLTNRPQDVAQNSASFQENVAGFLGHQPGFSGSEMPESGHDQSQIPSMADAVSAATAAITEDPNLRAALVGAIASVFGRTQLGRNISNSTNSDG 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1105689 1107712 + Bpe023837.1 Bpe09g00165 108565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00165 391 MobiDBLite consensus disorder prediction 116 154 - -
Bpe09g00165 391 Pfam WRKY DNA -binding domain 178 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe09g00165 391 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 1 378 - -
Bpe09g00165 391 MobiDBLite consensus disorder prediction 45 64 - -
Bpe09g00165 391 SMART WRKY_cls 176 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe09g00165 391 ProSiteProfiles WRKY domain profile. 171 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe09g00165 391 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 378 IPR044810 GO:0003700
Bpe09g00165 391 MobiDBLite consensus disorder prediction 76 95 - -
Bpe09g00165 391 MobiDBLite consensus disorder prediction 38 95 - -
Bpe09g00165 391 MobiDBLite consensus disorder prediction 132 154 - -
Bpe09g00165 391 MobiDBLite consensus disorder prediction 116 131 - -
Bpe09g00165 391 SUPERFAMILY WRKY DNA-binding domain 168 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe09g00165 391 Gene3D WRKY domain 161 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00165 - - - tcc:18593465 294.664
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00784 Bpe09g00165 CCT
Bpe03g00784 Bpe09g00165 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00165 Bpe-Chr9:1105689 Bpe15g00723 Bpe-Chr15:17745681 5.76E-96 dispersed
Bpe12g00210 Bpe-Chr12:1671575 Bpe09g00165 Bpe-Chr9:1105689 8.73E-87 wgd
Bpe03g00784 Bpe-Chr3:27807468 Bpe09g00165 Bpe-Chr9:1105689 2.11E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g540 . . . . Bpe09g00165 . Bma10g00563 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00896 . Bda05g00712 Bda12g00922 . Bpe03g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016612 2 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21858 PF03106 WRKY 8.60E-24 CL0274 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00165 Bpe_Chr09 FPKM 8.977831 9.363106 3.574146 3.331121 8.672609 6.863379 7.482691 1.966507 2.24448 1.972807