Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00169 ATGGTTCAGATCGTGAAGAGGAAGAAGGGCAGGCCGTCTAAGGCAGATCTGGCACGCCGGTTCAGCGACTCTCCGGCGGTCGAACCGGTTATCCGGCGAAGTCACCGGCGTAGAAATGTGAAGTACAACATAGACTATGACGACTATCTGGACGACGATGACGAGGAAGAGGATGAGAGGTTGCAGAAGAAGCTCAAGCTGAAGCTTGTGGTGAAGCTGAACCAAGGCGAAAAGGAAGCTGAGCCGGAGCTAAGCAGAGCTCTCACGGAGTTGCGTGGTTCGCACGCGCTGGACGACGCCGAGTCTCAGTCCGAGGAGGACGAGTCGGAAAGGAAGCTTTTAAAGAATAGGAGGATTGGCCATGTTAATGACGACGATGAAAAAGAGGAAGACGACGATGGTGAAAATCTGGGGGTTGCTGAGGATGAAGATAACCTAAGGGCAAGACGAAGAACTAAAGTTGGCTCAAAAGGATCGAAATCTGTTCCAGGGACTCCATCTGACACTCAATCTGGGATACCACTACCTGACAAGAAAACACTGGAATTGATCCTCGACAAACTTCAGAAGAAAGACATTTATGGTGTGTATGCCGAACCAGTTGATCCAGATGAGCTGCCTGATTATCACGATGTAATTGAGCATCCGATGGATTTTGCTACGGTGAGGAAGAAATTGGCTGGTGGAGCCTATTCAACTTTGGAACATTTTGCGACTGACATATTCCTTATCTGCTCAAATGCAATGCAATATAATGCACCAGATACCATATACTATAAACAGGCCCATACCATACAAGAGCTTGCAAAGAAGAAATTTGAAAGGTTAAGAGTTGATTATGAAGGCTCTGAGAAAGAGCTCAAGCTAGAGCAGAAAACAAAATCCAATCATTTAGTCAAGAAACTGGTAAAGAAGCTGCCAGGCCGGATCCCACTGGAACCAATTGGATCAGATTTCTCCTCAGGTGCTACTCTTGCCACTGTTGGAGACGTTCAGAACTGTTCCTATCCAACCCAAGGTGGTAATGATGAGAAAAATGGCAATATTGATGGCCATGTAGAAGGAAATTCTTCTCTGTATGATAATAATTTGGAGAAAGCAGAAGAATCACTTTTAGGTAAGGGTTTCTTATCTAGATTAGGGAGAAAGTCGGTGCTGCTTGATGAAAACCATCGAGCAACATATAATATTTCTAATCAGACAGAAGTCAGATCAGAATCAATATTATCAACCTTTGAAGGAGAAATGAGGCAGCTTGTTGCAGTTGGCCTTCATGCAGAATATTCATATGCCAGGAGCTTGGCTCGTTTCGCTGCAACTCTCGGGCCTGTTGCTTGGAAAGTTGCCTCCAAGAGGATTGAGCGGGCCCTTCCTGATGGGTGTAAATTTGGCTTTGGTTGGGTTGGAGAATATGAGCCACTTCCAACTCCAGTACTAATATTTGAGAATCACAATCTGAAGGAATTTGGTTTATTTCCTCCCTCGCCTTCTGCTGCCGAAGAATTGAGAAAGAATGAGAAATTGTTAACTAACTCTTTTCCTTCCAAGGAGAACAGCATGAATGGACCTAATACAGAGGTAAAACCATCTTTGTTGGATCCTGCTAGGAGGGATACTTCAGATGTCAAACCAGTATTGTTTGCTCCGGGAGGGATTAAAGATAATTTACCCTTAAATGCTGCATATCAGCTGCAAAACCTGCAATCCAACAATTTTACAAAACCAAGCAAGATGAATAATCAGTTTGAGTTGAACTTGTTACCCACCCCTATTCAGAATAATGCCGATCCTGTCTCAGAAAAGCAATGTTCGATTAATTCACAATCTATTGCTTCCAGGTCCACAGACTCTGCCCTTGCTAAAATGAGTCTTCTATCATGTGGATCTTTTAAACTGCCAGATTCTAATGGCGCTGTCACTGCAGTATTACCAAATGGAAAAAGAGTGAGTGATTGCTTAAGTACTCATCCTGCAATAGTTTCTTCTGATAGTCTAGCTAGAGTGGCAGCATGCTCCTCCCAGGGCCAAGAGCAGGGTCTTGCTGACCCAGTTCAGTTAGTGAGATCGTTGAGTGAAAAGTTTCAAAGGAATCAGATATATTCAAATCAAGGTCCAGTAGAAGCTCCTCCAGTTATGACAGTTGAGTGTAATACCAGAAAGAATAATGAATCCAACAATGCTTCCATGGCAGCTGCCCGTGCTTGGATGTCTGTTGGGGCTGGAGGTTTTAAGAAAATTACAGAAAATCCTCTTCTGCCAAATAATCACATATCTGCAGACTCACTATACAACCCAGCCAGGGACTTTAATCCACAAATCACTCGAGCTCGTGTGGAGTCTCCTAGAGCTGTGGTGAACAAATTTCATTCTGACAAGAATGGAATCCCCCTGCTGACAAGTTTACCTCAGCCTGTCCGTATGGGCAATGAAGCTCAGCTGCGAAATCAACCTATAGTTTTTCCACAATTATCTCCTGCCGACCTATCTAGGTTTCAATTGCATCCCCATTGGCAAGGTCTTAGCCCCCATGCCCAGCCAAAGCAAAAGCAAGAAATGTTTCCCCCAGACTTGAACATTGGCTTCCAGAGCTCCAGTTCTCCTGTTAGACAATCCTCTAGTGTCCAAATGGACTCACAGCAGCCAGACCTGGCTTTGCAACTTTGA 2664 44.44 MVQIVKRKKGRPSKADLARRFSDSPAVEPVIRRSHRRRNVKYNIDYDDYLDDDDEEEDERLQKKLKLKLVVKLNQGEKEAEPELSRALTELRGSHALDDAESQSEEDESERKLLKNRRIGHVNDDDEKEEDDDGENLGVAEDEDNLRARRRTKVGSKGSKSVPGTPSDTQSGIPLPDKKTLELILDKLQKKDIYGVYAEPVDPDELPDYHDVIEHPMDFATVRKKLAGGAYSTLEHFATDIFLICSNAMQYNAPDTIYYKQAHTIQELAKKKFERLRVDYEGSEKELKLEQKTKSNHLVKKLVKKLPGRIPLEPIGSDFSSGATLATVGDVQNCSYPTQGGNDEKNGNIDGHVEGNSSLYDNNLEKAEESLLGKGFLSRLGRKSVLLDENHRATYNISNQTEVRSESILSTFEGEMRQLVAVGLHAEYSYARSLARFAATLGPVAWKVASKRIERALPDGCKFGFGWVGEYEPLPTPVLIFENHNLKEFGLFPPSPSAAEELRKNEKLLTNSFPSKENSMNGPNTEVKPSLLDPARRDTSDVKPVLFAPGGIKDNLPLNAAYQLQNLQSNNFTKPSKMNNQFELNLLPTPIQNNADPVSEKQCSINSQSIASRSTDSALAKMSLLSCGSFKLPDSNGAVTAVLPNGKRVSDCLSTHPAIVSSDSLARVAACSSQGQEQGLADPVQLVRSLSEKFQRNQIYSNQGPVEAPPVMTVECNTRKNNESNNASMAAARAWMSVGAGGFKKITENPLLPNNHISADSLYNPARDFNPQITRARVESPRAVVNKFHSDKNGIPLLTSLPQPVRMGNEAQLRNQPIVFPQLSPADLSRFQLHPHWQGLSPHAQPKQKQEMFPPDLNIGFQSSSSPVRQSSSVQMDSQQPDLALQL 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1164103 1168735 + Bpe023841.1 Bpe09g00169 108569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00169 887 MobiDBLite consensus disorder prediction 95 125 - -
Bpe09g00169 887 MobiDBLite consensus disorder prediction 838 887 - -
Bpe09g00169 887 CDD Bromodomain 177 273 - -
Bpe09g00169 887 SMART bromo_6 170 278 IPR001487 GO:0005515
Bpe09g00169 887 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 887 - -
Bpe09g00169 887 ProSiteProfiles Bromodomain profile. 189 259 IPR001487 GO:0005515
Bpe09g00169 887 SUPERFAMILY Bromodomain 162 276 IPR036427 GO:0005515
Bpe09g00169 887 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 887 - -
Bpe09g00169 887 MobiDBLite consensus disorder prediction 512 535 - -
Bpe09g00169 887 Pfam Bromodomain 183 263 IPR001487 GO:0005515
Bpe09g00169 887 MobiDBLite consensus disorder prediction 95 175 - -
Bpe09g00169 887 MobiDBLite consensus disorder prediction 857 887 - -
Bpe09g00169 887 ProSitePatterns Bromodomain signature. 195 251 IPR018359 -
Bpe09g00169 887 MobiDBLite consensus disorder prediction 158 174 - -
Bpe09g00169 887 PRINTS Bromodomain signature 222 240 IPR001487 GO:0005515
Bpe09g00169 887 PRINTS Bromodomain signature 206 222 IPR001487 GO:0005515
Bpe09g00169 887 PRINTS Bromodomain signature 240 259 IPR001487 GO:0005515
Bpe09g00169 887 MobiDBLite consensus disorder prediction 1 26 - -
Bpe09g00169 887 Gene3D - 176 297 IPR036427 GO:0005515
Bpe09g00169 887 MobiDBLite consensus disorder prediction 512 526 - -
Bpe09g00169 887 Coils Coil 97 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00169 K22184 BRD9; bromodomain-containing protein 9 - qsu:112021064 903.279
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00789 Bpe09g00169 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00169 Bpe-Chr9:1164103 Bpe12g00149 Bpe-Chr12:1086321 1.09E-85 dispersed
Bpe03g00789 Bpe-Chr3:27858339 Bpe09g00169 Bpe-Chr9:1164103 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00169 Bpe_Chr09 FPKM 2.262305 2.213218 3.282463 3.699046 10.811367 9.89177 10.60363 1.358629 2.439227 2.258861