Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00171 TTAGAAAGGAGGCAAGCAGAAGCCGCACGCATTAGGGAGAAGTATCCTGATAGAATTCCAGTTATCGTGGAGAAGGCTGAAAGAAGCGATATATCTGACATCGATAAGAAAAAATACTTGGTTCCTGCTGATTTAACCGTTGGGCAGTTTGTGTACGTTGTTCGTAAGAGGATCAAGCTGAGCGCCGGAAAGGCGATATTTATTTTCGTGAAGAATATTTTGCCACCTACTGTTGCATTAATGTCGGCGATCTACGAAGAAAACAAGGATGAGGATGGTTTCCTATACATGACATACAGTGGCGAAAACACGTTCGGATGG 321 43.3 LERRQAEAARIREKYPDRIPVIVEKAERSDISDIDKKKYLVPADLTVGQFVYVVRKRIKLSAGKAIFIFVKNILPPTVALMSAIYEENKDEDGFLYMTYSGENTFGW 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1183041 1183690 - Bpe026208 Bpe09g00171 108571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00171 107 CDD Ubl_ATG8 1 103 - -
Bpe09g00171 107 SUPERFAMILY Ubiquitin-like 1 106 IPR029071 -
Bpe09g00171 107 PANTHER AUTOPHAGY-RELATED PROTEIN 1 107 - -
Bpe09g00171 107 Gene3D - 1 106 - -
Bpe09g00171 107 Pfam Autophagy protein Atg8 ubiquitin like 3 106 IPR004241 -
Bpe09g00171 107 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 107 IPR004241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00171 K08341 GABARAP, ATG8, LC3; GABA(A) receptor-associated protein - psom:113287952 197.208
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00790 Bpe09g00171 CCT
Bpe03g00790 Bpe09g00171 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00613 Bpe-Chr7:12894794 Bpe09g00171 Bpe-Chr9:1183041 1.96E-39 dispersed
Bpe09g00171 Bpe-Chr9:1183041 Bpe14g01019 Bpe-Chr14:7589919 9.72E-62 dispersed
Bpe12g00217 Bpe-Chr12:1789635 Bpe09g00171 Bpe-Chr9:1183041 1.75E-62 wgd
Bpe03g00790 Bpe-Chr3:27875410 Bpe09g00171 Bpe-Chr9:1183041 7.74E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g525 . . . . Bpe09g00171 . Bma10g00551 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1167 . . . . Blo07g00902 . Bda05g00718 Bda12g00912 . Bpe03g00790 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000267 6 8 5 7 6 4 7 4 4 5 4 4 5 5 5 6 4 9 4 3 5 4 4 3 2 2 4 9 8 5 151
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00171 Bpe_Chr09 FPKM 15.450644 18.358889 11.882648 14.308807 12.201409 10.385425 11.259586 9.095597 8.075037 9.565152