Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00180 ATGAAAAGGAAAAGATCGAAGGATTTTAACAAGCAGAATAGCTTGTCGGAAGTCCGAGAAATTGAGCTTCTCAACTCATGGATTCAATCGCAGAAACCCGACTCTGGCTCCAATCCCTTGTCGCTACCTTCCCTGCCGTTAAACGCACCTATTGGTGACCTTGGTGGCGGTTTGTACTCGCGTTATGCTGGAGCCACGAGATTTGGTCAGTTGCCCATTTCGAAGAAGGTCAAGGACGGATTGCGCAAATCCAATTACATTGAGATGACTGATATACAGAGGGCCTCGCTTCCTCATGCCCTTTGCGGTCGGGACATTCTTGGTGCAGCTAAAACTGGGTCAGGAAAGACTTTGGCATTTGTCATACCGGTTCTTGAAAAATTATATAAAGAGAGATGGGGTCCCGAAGATGGTGTTGGGAGTATCATTATATCTCCAACAAGGGAGTTAGCTGTTCAGCTGTTTGAGGTGCTGAAAAATATCGGGAAACATCATAACTTCAGTGCTGGCCTCTTAATTGGTGGAAGGAAGGATGTTGACACTGAGAAGGAGCGTGTCAATGACCTGAACATACTTGTTTGTACTCCTGGTCGGCTGCTCCAGCACATGGATGAGACTCCTAATTTTGACTGTTCGCAGCTTCAGGTTTTAGTTCTTGATGAAGCAGATCGAATTCTCGATGTTGGATTTAAGAAGGCGTTGAATGCAATTATTTCGCAGCTACCTAAACATAGGCAGACTATGCTATTCTCAGCAACTCAAACAAAGTCCATTCAGGATCTTGCCAGACTCAGCTTGAAGGACCCAGAATATTTAAGTGTTCACAAGGATGCTTTAACTGCCACCCCAAATCTCTTGCAGCAAACTGCAATGATTGTGCCTTTGGAGCAAAAATTGGACATGTTATGGAGTTTCATAAAGTCTCATCTTAATTCTAAGATTCTAGTTTTCCTCTCAAGCTGCAAGCAGGTAAAATTCGTATTTGAAGCATTCAAGAAGCTGCGTCCTGGAATTCCCCTGAAATGTCTGCATGGAAAGATGAGGCAGGAGAGAAGATTAGGAATATATTCTGAGTTCTGTGAGCAACGTGCAGTTCTCTTCTCCACTGACGTGGTATCAAGAGGTCTTGATTTTGATAAAGCAGTTGACTGGGTTGTACAGGTGGATTGTCCTGACAATGTAGATTCTTACATTCACAGAGTTGGGCGAACCGCACGATATCAATCGAAAGGGAGATCAGTGTTGTTTCTTATTCCTTCAGAGATGAAAATGCTAGAAAAACTACAAGCAGAGAAAGTCCCAGTGAATTTCGTCAAGGCAAACTTAAATAGACTTCAGCCAGTTTCTGGATTACTTTCATCTTTATTAGTTAAGTATCCAGAAATGCAGCAACTGGCTCAAAGAGCCTTCATCACTTACATGCGATCGATAAACATGCAGAGTGACAGAGAAATTTTTGACATCACGAAAATGCCTATAGATGAGTTTTCAGCATCTATGGGACTCCCTATGACCCCAAAAGTTCGTTTTTTGAACCAGAAAATTAAGCGCATAAAAGTAAGTGGGAAGCTCAATGTGGAAAAGTCTGACAAGGATATGGATGCCAATATTCCAAGGGAGAAGCTAGACATTGGTGACTTAGATGAAGAAATAGTGAACAAATCGCCTCTTTCACCGGATGACATCCCTAAGGACATGGTAGACAAAGCTCAAGTTGAAGATATTGTGCCAGCTACACGTGTCTCAAAGAAAAAGAAGTTAAAGATCAACATCCACAGACCCGTGGGTTCCAGAGTTGTCTTTGATGATGACGGTAATACACTTGCCCCGCTCGCAAGGATAGCTGACATAAAAAGCGGGGGCGATGTTGCGCTTGACAATGACAAAAAAAATGAGTATTACAAGAAAATGAGAGCTGAGATGAAGGAGGCCGATAAGGAAGACAAGCATATAGAAAGGGATCGACTACGGGAAAAGCGGATCAAGAAGAAGATGAAGGAGAAGAAAGAAGAGGATTTGCATTCAGAGTCGGACGAAGATGAAGACACAAGAGGAGGCAGACCTCACAAGAGACAGAAGAAATATTTCGACAGGAAGATATCAAGTAGACTTGGTAACGAGGAAGAACAGGAAACTAGACTGCAACTTCATTCAATAACACTAAGAAAATTGAGTATAAAACTATTAAAACTTATAAGAAGAACTTAA 2208 42.26 MKRKRSKDFNKQNSLSEVREIELLNSWIQSQKPDSGSNPLSLPSLPLNAPIGDLGGGLYSRYAGATRFGQLPISKKVKDGLRKSNYIEMTDIQRASLPHALCGRDILGAAKTGSGKTLAFVIPVLEKLYKERWGPEDGVGSIIISPTRELAVQLFEVLKNIGKHHNFSAGLLIGGRKDVDTEKERVNDLNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKALNAIISQLPKHRQTMLFSATQTKSIQDLARLSLKDPEYLSVHKDALTATPNLLQQTAMIVPLEQKLDMLWSFIKSHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGKMRQERRLGIYSEFCEQRAVLFSTDVVSRGLDFDKAVDWVVQVDCPDNVDSYIHRVGRTARYQSKGRSVLFLIPSEMKMLEKLQAEKVPVNFVKANLNRLQPVSGLLSSLLVKYPEMQQLAQRAFITYMRSINMQSDREIFDITKMPIDEFSASMGLPMTPKVRFLNQKIKRIKVSGKLNVEKSDKDMDANIPREKLDIGDLDEEIVNKSPLSPDDIPKDMVDKAQVEDIVPATRVSKKKKLKINIHRPVGSRVVFDDDGNTLAPLARIADIKSGGDVALDNDKKNEYYKKMRAEMKEADKEDKHIERDRLREKRIKKKMKEKKEEDLHSESDEDEDTRGGRPHKRQKKYFDRKISSRLGNEEEQETRLQLHSITLRKLSIKLLKLIRRT 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1247563 1257219 + Bpe026209 Bpe09g00180 108580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00180 735 Coils Coil 627 671 - -
Bpe09g00180 735 MobiDBLite consensus disorder prediction 664 688 - -
Bpe09g00180 735 MobiDBLite consensus disorder prediction 656 712 - -
Bpe09g00180 735 Gene3D - 281 534 IPR027417 -
Bpe09g00180 735 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Bpe09g00180 735 Gene3D - 59 278 IPR027417 -
Bpe09g00180 735 SMART DUF4217_3 447 510 IPR025313 -
Bpe09g00180 735 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Bpe09g00180 735 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Bpe09g00180 735 CDD DEADc_DDX10 78 275 - -
Bpe09g00180 735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Bpe09g00180 735 MobiDBLite consensus disorder prediction 698 712 - -
Bpe09g00180 735 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
Bpe09g00180 735 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Bpe09g00180 735 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 57 538 - -
Bpe09g00180 735 SMART helicmild6 325 408 IPR001650 -
Bpe09g00180 735 SMART ultradead3 85 288 IPR014001 -
Bpe09g00180 735 CDD SF2_C_DEAD 286 417 - -
Bpe09g00180 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 274 IPR027417 -
Bpe09g00180 735 Pfam Domain of unknown function (DUF4217) 452 508 IPR025313 -
Bpe09g00180 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 424 IPR027417 -
Bpe09g00180 735 PANTHER RNA HELICASE 57 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00180 K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] - jre:108993658 1009.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g01027 Bpe-Chr5:22877088 Bpe09g00180 Bpe-Chr9:1247563 2.23E-67 dispersed
Bpe09g00180 Bpe-Chr9:1247563 Bpe13g00336 Bpe-Chr13:11222247 7.23E-101 dispersed
Bpe09g00180 Bpe-Chr9:1247563 Bpe07g00856 Bpe-Chr7:14710133 8.54E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00180 Bpe_Chr09 FPKM 0.0 0.0 0.054144 0.062944 0.391288 0.408105 0.368954 0.255808 0.174651 0.089865