Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00197 ATGGCACTGAGAAATTTTAATGGCGTCTCTGAGAAACTGCTCACATCCATACCCGACTTTCTCAATTCGCAGAGGACCCGGAAGAGATTTACAGTGAAGGGATTTCTGAGCAAGAAAACAGAGGATTTGGAAGAAACCCCATTAATGGTTTCGCGGAGAGTGGCGTTTGGGATTGCGTCTTTAGCTGTCCTTCAAAGTACTGGCAATGGAGTTTCTGTTGCTGCCGATAATGGGTTTTGGATTGAAGGCCCTCTGCCTATTCCTCCTCCGGTCTACAACAATATCGCAAATGAAAAAACGGGAACGCGTTCGTTTCTGAAGAAGGGTCTTTTCATGGCAGAATTAGGAACTGAAGCAAGAAAATACAGGCTGAAGAAATATGCTTTTGACCTCCTGGCAATGGCTGACTTAATCGGAAAAGATACTTTGAATTATGTTAGGAAGTATCTTCGTCTCAAATCTACTGTAATGTACTATGATTTCGATAACCTTATCTCGGCTGCAGATGATAACGATAAGCAGCCACTCACTGATTTGGCAAACCGATTATTCAATAATTTTGAGAAGCTCGAAGATGCAGCAAAGCGGAAAAATTTCTCTCAAACAGAGTCGTGTTATGAAGAGACAACCGGATTGCTTCAAGAGGTGATGGATAGAATGGGATCAGTCTGA 672 42.56 MALRNFNGVSEKLLTSIPDFLNSQRTRKRFTVKGFLSKKTEDLEETPLMVSRRVAFGIASLAVLQSTGNGVSVAADNGFWIEGPLPIPPPVYNNIANEKTGTRSFLKKGLFMAELGTEARKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTVMYYDFDNLISAADDNDKQPLTDLANRLFNNFEKLEDAAKRKNFSQTESCYEETTGLLQEVMDRMGSV 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1389543 1390905 + Bpe023864.1 Bpe09g00197 108597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00197 223 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 3 220 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Bpe09g00197 223 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC 3 220 - -
Bpe09g00197 223 SUPERFAMILY Oxygen-evolving enhancer protein 3, 111 220 IPR023222 -
Bpe09g00197 223 Gene3D - 82 221 IPR023222 -
Bpe09g00197 223 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 23 221 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00197 K08901 psbQ; photosystem II oxygen-evolving enhancer protein 3 - pvy:116128737 286.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00370 Bpe-Chr1:2335013 Bpe09g00197 Bpe-Chr9:1389543 5.58E-10 dispersed
Bpe02g02336 Bpe-Chr2:23921342 Bpe09g00197 Bpe-Chr9:1389543 2.68E-07 dispersed
Bpe09g00197 Bpe-Chr9:1389543 Bpe08g00335 Bpe-Chr8:1985792 6.87E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g418 . . . . Bpe09g00197 . . Bma13g01024 . . Cma01g01153 . . . Sed07g2652 . Cpe02g00748 Bhi09g01948 Tan01g4503 Cmetu04g3024 . Hepe01g1313 Mch11g1150 . . . . . . . . . . . Cone15ag1136 Lsi04g01247 . Chy04g01018 . . Blo10g00803 . Bda12g00884 . . . . . Cmo01g01206 . . . . Car16g00565 . . . . . . . . . Cla05g01541 Cam05g1649 Cec05g1654 Cco05g1693 Clacu05g1642 Cmu05g1537 Cre05g1647 . . . Cme04g00802
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011918 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00197 Bpe_Chr09 FPKM 8.901816 9.058331 10.97481 10.91362 10.79711 10.956092 11.618634 13.883233 14.159616 13.704853