Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00237 ATGGCGACAGCTTCAGCAGTATCCGTTGCCATGAACGGAGGAGTACGCGTCGCTGCATCCTCGCATTCGCTGGCTTATTTGGAGGGAAAAGCTGTAAATGATACAAAGGTTCTAATATCGGAGCTCTGCCGCCAATTCTATAACCTCGGATGGGTCTCCGGTACCGGTGGCAGTATCACTATGAAGGTCCATGATGACTCTATTCCTAAACCCAATCAGCTGATTGTCATGTCCCCTTCTGGTGTTCAGAAGGAGAGAATGGTGCCAGAGGACATGTATGTAATGTCTTCCAGTGGATCTATCCTGTCCTCACCTATTCCAAAGCCATATCCTCATAAGCCTCCAAAGTGTTCTGATTGCGGTCCACTTTTTATGAAGGCCTATTCAATGCGAAATGCAGGAGCTGTCATACATAGTCATGGATTAGAATCCTGTCTTATCACCATGATCAATCCATCATCTAAAGAGTTTCGAATAACTCACATGGAAATGATAAAAGGAATTCAAGGGCATGGATATTATGACGAACTTGTGGTGCCAATCATAGAGAACACTGCATATGAATATGAGCTCACAGAATCTCTTGCTAAAGCTATCGAAGCATACCCGAAAACAACAGCTGTGCTTGTTCGCAATCACGGTATTTATGTATGGGGAGATTCGTGGATAAGTACCAAAACGCAAGCTGAATGTTATCACTATCTCTTTGATGCTGCTCTCAAGCTTCACCAACTGGGTCTTGACTGGTCTACTCCAAATCATGGTCCTATTCAGAGAGGCAAAGAAATTTCTGCTAAATCTGGGACTCTGGATTTAACTCATACAATTGAGCCATTGTCTCGCTGCATTGTCCTTGACATTGAAGGAACTACAACTCCTATATCATTTGTGACTGATATTCTCTTTCCTTATGCCCGTGATAATGTTGGGAAGCACTTATCTTTAACATTTCACACTTCAGAAACTCAAGAAGACATTAAGTTATTGCGTGATCAGGCTCAAAATGACTTGGACAATGGAATTACTGGTGCTGTTCCTATTCCTCCAGAGAATTCAGGGAAAGAGGAGGTGATTGAAGCAGTGGTTGCTAATGTTGCAGCGATGATAAAAGCCGACAGGAAAATTACTGCCTTGAAACAACTGCAAGGTCACATATGGAGAACTGGTTTTGAACAGGGTGAACTGGAGGGAGTAGTCTTTGAGGACGTACCAGTAGCTCTTGAAAGGTGGCATGCTTTGGGCATAAAGGTCTACATATACTCCAGCGGTAGCAGGCTGGCACAAAGGCTTTTATTCGGAAAGACCAAGTATGGCGATTTAAGAAAATTCTTATCCGGGTTTTTCGATACGACCGTGGGGAACAAAAGAGAAGTAAACAGCTATGTTGAAATCTCAGAATACCTTGGCGTCAAGCCATCAGAGATTCTGTTTCTAACTGATGTCTTTCAAGAAGCTACAGCAGCAAAGGCTGCAGGATTGGAATCGATTATTTCTATCCGACCCGGAAATGGACCTCTTCCGGATAACCATGGATTCAAGACAATCACTTCTTTTGCAGAAATTTGA 1566 43.17 MATASAVSVAMNGGVRVAASSHSLAYLEGKAVNDTKVLISELCRQFYNLGWVSGTGGSITMKVHDDSIPKPNQLIVMSPSGVQKERMVPEDMYVMSSSGSILSSPIPKPYPHKPPKCSDCGPLFMKAYSMRNAGAVIHSHGLESCLITMINPSSKEFRITHMEMIKGIQGHGYYDELVVPIIENTAYEYELTESLAKAIEAYPKTTAVLVRNHGIYVWGDSWISTKTQAECYHYLFDAALKLHQLGLDWSTPNHGPIQRGKEISAKSGTLDLTHTIEPLSRCIVLDIEGTTTPISFVTDILFPYARDNVGKHLSLTFHTSETQEDIKLLRDQAQNDLDNGITGAVPIPPENSGKEEVIEAVVANVAAMIKADRKITALKQLQGHIWRTGFEQGELEGVVFEDVPVALERWHALGIKVYIYSSGSRLAQRLLFGKTKYGDLRKFLSGFFDTTVGNKREVNSYVEISEYLGVKPSEILFLTDVFQEATAAKAAGLESIISIRPGNGPLPDNHGFKTITSFAEI 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1708407 1714524 - Bpe023907.1 Bpe09g00237 108637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00237 521 Hamap Enolase-phosphatase E1 [mtnC]. 279 521 IPR023943 GO:0000287|GO:0019509|GO:0043874
Bpe09g00237 521 SMART Aldolase_II_2 37 240 IPR001303 -
Bpe09g00237 521 SUPERFAMILY HAD-like 281 521 IPR036412 -
Bpe09g00237 521 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 281 520 - -
Bpe09g00237 521 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 9 521 IPR017714 GO:0005737|GO:0019509|GO:0046872
Bpe09g00237 521 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 9 521 - -
Bpe09g00237 521 CDD HAD_EP 282 502 IPR023943 GO:0000287|GO:0019509|GO:0043874
Bpe09g00237 521 SUPERFAMILY AraD/HMP-PK domain-like 34 253 IPR036409 -
Bpe09g00237 521 Pfam Class II Aldolase and Adducin N-terminal domain 39 239 IPR001303 -
Bpe09g00237 521 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 39 245 IPR017714 GO:0005737|GO:0019509|GO:0046872
Bpe09g00237 521 Gene3D - 391 521 IPR023214 -
Bpe09g00237 521 Gene3D - 32 258 IPR036409 -
Bpe09g00237 521 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 24 521 IPR027505 -
Bpe09g00237 521 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 24 248 IPR027514 GO:0005737|GO:0019509|GO:0046872
Bpe09g00237 521 Gene3D - 294 390 - -
Bpe09g00237 521 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 281 519 IPR023943 GO:0000287|GO:0019509|GO:0043874
Bpe09g00237 521 SFLD enolase-phosphatase 281 520 IPR023943 GO:0000287|GO:0019509|GO:0043874
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00237 K16054 DEP1; methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] - jre:108992851 834.328
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00237 Bpe_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0