Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00254 ATGAGGAACTCGCCTGTTTCCAGCTCTGCTGGCTGGAATATTCCATACAGAATAGAAACCATAAATCTTTCTTACAAAATACTAGGCGAAACAAAATGGTTTCAGGCTGGTGGGTCTTCGACTAGAGGTTCGAAGTTCATTCTGAAGAATGTGAATTGCGATGCATATGCCGGCGAGATGACTGCGATAGTGGGTCCCAGCGGCGCCGGGAAAACAACTCTGTTGGAGATTCTCGGTGGAAAGGCATCTGAAAAGAATATTTCCGGTCAAGTTCTCGTCAATGATCAGCTTGTGAATGATAAAAGATTTCAAAGAATTTTAGGATATGTCACCCAAGACGATGCTCTCTTCCCTCTACTTACAGTGGAAGAAACTCTCATGTATAGTGCTCTGCTGAGGCTTCACGGCGGAGAGATTGAACGAGTTTCTCGGGTGAGAGAACTCGTGAAGGAGCTCGGACTCGAGAAAGTTGCAGCTTCGAAAATCGGCCGGGGATCGAACTGGGGCATTTCGGGTGGCGAAAGGCGGAGAGTTTCGATCGGGATCGACTTGGTTCATGACCCACCTGTGATTCTGATCGATGAACCAACTTCAGGGCTGGATTCCGCCTCAGCTCTTCATGTCATCTCAGTGCTTAAAAGAATGACTGCAAATCAAGGCAAGACCATTGTTCTAACCATCCATCAGCCTGGCTTTCGAATCATTCAACTCTTTGATCGACTCGTTCTACTATCGAATGGATTCGTTGTCCACAACGATTCGCTAAATTGTCTCGAAGAAAGGCTTCGACTGGCTGGTCATATCATACCTCACCATGTCAATGCGCTAGAATACTCCATGGATGTTTTGGACAGCTTGGCTGTACATTCTCCAGCAGTTTCTCCCCAAAACCCGAGTTTCCTGAAAGATAATACGACTAAATCTTCATTTCCGAGCAAAGAAAACCCTTTTTCCTATGCAAATCCTCAGATAAAAGAGATTCTCATTCTAGGACAGAGATTTTGCAGAAACATATTCCGAACCAAACAACTTTTTGCCACCAGAATTATTCAAGCATCAGTAGCTGGATTAATACTAGGAACTATATTTCTAAACAACGGCAATGAACAAGGACAAATTGCATTGCAAACCCGGCTCGGTTTTTTTGCATTCAGCCTCACTTTCTTGCTGTCTTCAACAACAGAAGGGTTACCAATTTTCTTACAAGAGAGAAGAATCATAATGGGAGAGACATCAAGAGGAGCATACAGAATTTCTTCTTATGTTTTGGCAAATACCCTAGTCTTTCTTCCATTCCTATTGATGGTGAGTCTTTTTTATGCAACCCCAGTTTACTGGTTAGTGGGTTTGAGAAAGGAGATTTTCAGCTTTCTCTACTTCTGTCTAGTGGTTTGGATGGTAGTGTTGATGTCTAACTCTTTGGTAGCCTGCTGCAGTGCTCTAGTCCCAAACTTTATAATGGGTACCTCAGTCATAGCAGGGTTGATGGGATCATTCTTTCTGTTTTCTGGGTATTTTATATCAAAGCAAAACATACCTAATTATTGGATTTTCATGCACTATTTGAGTCTTTTCAAGTACCCATTTGAGTGTTTTATGATAAATGAGTATGGAGGAGAGGAAGGGAGGAGAAGAAAGTGCATAGAAATTGAGGAGGGGCAATGCAGACTCAATGGAGGAGAATTCTTAGCTCAACAAGGACTAAAAGAGTCACAGAAATGGAGCAATTTGGCAGTCATGCTAGGCTTCATTATTGGGTATAGAGTTCTTTCTTTCCTCATTTTATGGTACAGATGTTGCAGAAATAACAGAATCTAG 1818 42.46 MRNSPVSSSAGWNIPYRIETINLSYKILGETKWFQAGGSSTRGSKFILKNVNCDAYAGEMTAIVGPSGAGKTTLLEILGGKASEKNISGQVLVNDQLVNDKRFQRILGYVTQDDALFPLLTVEETLMYSALLRLHGGEIERVSRVRELVKELGLEKVAASKIGRGSNWGISGGERRRVSIGIDLVHDPPVILIDEPTSGLDSASALHVISVLKRMTANQGKTIVLTIHQPGFRIIQLFDRLVLLSNGFVVHNDSLNCLEERLRLAGHIIPHHVNALEYSMDVLDSLAVHSPAVSPQNPSFLKDNTTKSSFPSKENPFSYANPQIKEILILGQRFCRNIFRTKQLFATRIIQASVAGLILGTIFLNNGNEQGQIALQTRLGFFAFSLTFLLSSTTEGLPIFLQERRIIMGETSRGAYRISSYVLANTLVFLPFLLMVSLFYATPVYWLVGLRKEIFSFLYFCLVVWMVVLMSNSLVACCSALVPNFIMGTSVIAGLMGSFFLFSGYFISKQNIPNYWIFMHYLSLFKYPFECFMINEYGGEEGRRRKCIEIEEGQCRLNGGEFLAQQGLKESQKWSNLAVMLGFIIGYRVLSFLILWYRCCRNNRI 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1864082 1865899 + Bpe023925.1 Bpe09g00254 108654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00254 605 ProSitePatterns ABC transporters family signature. 170 184 IPR017871 GO:0005524
Bpe09g00254 605 CDD ABCG_EPDR 38 250 - -
Bpe09g00254 605 Pfam ABC transporter 48 198 IPR003439 GO:0005524
Bpe09g00254 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 263 IPR027417 -
Bpe09g00254 605 SMART AAA_5 57 248 IPR003593 -
Bpe09g00254 605 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 4 596 - -
Bpe09g00254 605 Pfam ABC-2 type transporter 228 288 IPR043926 GO:0140359
Bpe09g00254 605 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 271 IPR003439 GO:0005524
Bpe09g00254 605 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 596 - -
Bpe09g00254 605 Pfam ABC-2 type transporter 326 537 IPR013525 GO:0016020|GO:0140359
Bpe09g00254 605 Gene3D - 36 264 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00254 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - jre:109012373 821.617
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00256 Bpe-Chr3:3476943 Bpe09g00254 Bpe-Chr9:1864082 8.12E-168 dispersed
Bpe09g00254 Bpe-Chr9:1864082 Bpe15g00180 Bpe-Chr15:12539397 0 dispersed
Bpe09g00254 Bpe-Chr9:1864082 Bpe04g01691 Bpe-Chr4:22856956 5.03E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g128 . . . . Bpe09g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1028 Cone15ag1013 . . . . . Blo10g00737 . Bda12g00821 . . . . . . . . . . . Cpe14g00374 . . . . . . . . . . . . . . . . Csa04g00799 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003301 1 2 1 0 2 2 1 2 2 1 2 2 2 1 1 1 2 4 2 2 1 2 2 2 1 1 2 2 2 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00254 Bpe_Chr09 FPKM 48.926792 51.986317 10.172891 9.533506 37.522869 32.410358 34.581825 7.505933 8.28194 6.13893