Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00256 ATGGCGCTCTCCTACTTAGCGTCTCAGTCTTCTTCTCTCTTCCGCTCTACACTCGCGTTGCCGACCCTTGCGAGGATTCCTTCTCTCAGAAATCGTTTCTTCTGTGTTTCTGCTGCCATGTCTTCCACTACTCGTAAGGTTTTGGTCCCCATTGCGAATGGAACTGAGCCGATTGAGGCGGTGGTGACTATCGACGTGCTTCGACGTGCTGGAGCTGATGTGACGGTGGCCTCTGTGGAGAATCAGCTTTGTGTTACCGCTGCTCATCAAGTCAAGATTGTCGCTGATTCTCTTATTTCGGATTGTTCTGACACCGTGTTCGATCTTATTGCTCTTCCTGGAGGCATGCCAGGGGCTACTCATCTTCGAGATTGTGAAATTCTAGAAAATATGGTGAAGAAACAGGCTTCAAATGGACGTCTGTATGCTGCAATTTGTGCTTCCCCTGCTGTGGCATTAGGGTCTTGGGGTGTTCTTAAAGGATTGAAAGCAACTTGCTATCCATCTTTTATGGAGCAATTAGGGTCTTTTGCAACTGCTGTTGAGACCTTGGTTCAGATCGATGGGAAAGTTGTGACAAGTAGAGGGCCAGGCACTACGATGGAGTTTTCTGTTGCACTAGTTGACCAGTTGTATGGAAAAGACAAAGCTGATGAAGTTTCAGGGCCACTGCTGATGCGCTCCAACCCTGGCGATGAATATGCCATAAAAGATTTCAATCAAGTGGATTGGACGATTAATCACATTCCCAGGATTCTTGTGCCAATTGCTGATGGTTCTGAGGAAATGGAGGCTCTTTACATTGTTGACATCCTACGACGAGCAAAAATGGAAGTAGTGGTGGCTTCTGTTGAAAATAAGCTAGAGATCTCTTGCTCCCGCAAAGTTAAAATAGAAGCAGATTTACTTCTTGATAAAGCTCTGGAACAGTCGTATGACCTAATAGTCTTGCCGGGTGGACTTGGTGGCGCTCAAGCTTTTGGGAAATCCGATAAGCTGATTACTTTGCTTAAAAAACAAAGGGAATCAAATCGACCGTATGGAGCAATCTGTGCATCCCCAGCTTTGGCCCTAGAGCCTAATGGCTTACTTAAGGGCAAAAAGGCAACTGCCTTCCCCGCATTGTGTGACAAACTATCTGATCAAAGTGAAGTCGAAAACCGAGTGGTGGTTGATGGCAACCTTATTACGAGCAGAGGGCCAGGAACTTCCATCGAGTTTTCTCTAGCAATCGTGGAGAAGTTCTTAGGACGTCAAAATGCAGTGCAACTTGGAAAGACGCTTCTGTTTATACGCGAATAA 1302 46.16 MALSYLASQSSSLFRSTLALPTLARIPSLRNRFFCVSAAMSSTTRKVLVPIANGTEPIEAVVTIDVLRRAGADVTVASVENQLCVTAAHQVKIVADSLISDCSDTVFDLIALPGGMPGATHLRDCEILENMVKKQASNGRLYAAICASPAVALGSWGVLKGLKATCYPSFMEQLGSFATAVETLVQIDGKVVTSRGPGTTMEFSVALVDQLYGKDKADEVSGPLLMRSNPGDEYAIKDFNQVDWTINHIPRILVPIADGSEEMEALYIVDILRRAKMEVVVASVENKLEISCSRKVKIEADLLLDKALEQSYDLIVLPGGLGGAQAFGKSDKLITLLKKQRESNRPYGAICASPALALEPNGLLKGKKATAFPALCDKLSDQSEVENRVVVDGNLITSRGPGTSIEFSLAIVEKFLGRQNAVQLGKTLLFIRE 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1873376 1877822 - Bpe023927.1 Bpe09g00256 108656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00256 433 TIGRFAM not_thiJ: DJ-1 family protein 46 221 IPR006287 -
Bpe09g00256 433 TIGRFAM not_thiJ: DJ-1 family protein 251 424 IPR006287 -
Bpe09g00256 433 SUPERFAMILY Class I glutamine amidotransferase-like 45 228 IPR029062 -
Bpe09g00256 433 CDD GATase1_DJ-1 252 415 - -
Bpe09g00256 433 CDD GATase1_DJ-1 47 211 - -
Bpe09g00256 433 Gene3D - 246 432 IPR029062 -
Bpe09g00256 433 Gene3D - 37 236 IPR029062 -
Bpe09g00256 433 Pfam DJ-1/PfpI family 45 209 IPR002818 -
Bpe09g00256 433 Pfam DJ-1/PfpI family 251 413 IPR002818 -
Bpe09g00256 433 PANTHER BNAA06G01020D PROTEIN 41 429 - -
Bpe09g00256 433 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 41 429 - -
Bpe09g00256 433 SUPERFAMILY Class I glutamine amidotransferase-like 250 429 IPR029062 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00256 K03152 thiJ; protein deglycase [EC:3.5.1.124] - csv:101212934 636.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00256 Bpe-Chr9:1873376 Bpe12g00056 Bpe-Chr12:426039 3.95E-126 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g126 . . . . Bpe09g00256 . . Bma13g00931 . Cmo04g00612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00736 . . . . . . . . . Cma04g00572 . Car04g00542 . . Cpe01g00517 . . . . . . . . . . . . . . . Csa04g00801 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012103 0 3 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00256 Bpe_Chr09 FPKM 1.039511 1.792655 0.683131 0.607778 35.844086 34.64056 33.860943 2.983694 3.570468 4.584646