Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00261 ATGTCTCTTCGCAAAGCTTTGTTGTCTCGGCTTTCGTCTTCCAAGTCTTTTAAGGAATCCAAAGGTGCGGAAGAGGTTGCGCGTTTCGATTCGGAGATCGGGAAAGATTTGTCAGCTGAGTCTTCTGGCGAAGTTTGTAACTCTGCCTGGTCTTCGATGCTTCCGGAGATTCTCAGCGAGATTATAAGGCGCGTTGAGGTTAGCGACGAGCTGTGGCCTCACAGACAGAACGTTGTTGCTTGTGCTTGTGTGTGCAAGCGCTGGAGGGATCTTGCGAAGGAAATCGTCGCGGCTCCTTCGCTTAGTGGCAAAATCACTTTCCCTTCTTGTCTTAAGCAGCCTGGGCCACGCGACCTTCCGCATCAATGTATTATAAAACGAAACAAGAAAACCTCAACTTTTTATCTCCATCTCGCTCTTAGTCAATCATTCACGGATAAGGGAAAGTTTCTCTTAGCTGCACGGAGAAATAGGCATGGAGCTCACACAGAGTATATTATTTCTCTTGATGCTGAGGACATATCTCAAGGAAGCAATGCTTATGTAGGAAAATTAAGCTCGGACTTTATTGGCAACAATTTCACAATTTATGATAGCCAACCACCACACAATGGTGCAAAGCCATCAAGCAGTAAAGCCAGCCGTCGTTTTGCAAGCAAGCAAATAAGCCCCCAAGTTCCTGCTGGCAACTTTGAGGTTGGGCAAGTCTCTTACAAATTCAACCTTTTGAAATCAAGAGGTCCAAGAAGGATGATGTGCTTGTTGAAATGCCCATGGTTGGGAGAAACTGCCCTAGATAAACCATTGGAGCCCTCCAACACAGAGAAATCAGATTTTTCCTCTCCAGGTTTCACGATCTTGAAAAACAAAGCTCCAAGATGGCATCAGCATCTACAATGCTGGTGTTTGAATTTCCATGGGCGAGTGACGGTGGCTTCAGTGAAGAACTTTCAACTCATTGCCACCACTGACCAGAGCCAACCTGGTGGAAAAGGAGACGAAGAAACAGTTCTCCTCCAGTTTGGTAAAGTGAGCGACAATCTCTTCACCATGGATTACAGGCAGCCATTGTCGGCATTTCAAGCTTTTGCCATTTGCCTCACCAGCTTCGGCACAAAACTTGCCTGCGAGTAG 1134 46.38 MSLRKALLSRLSSSKSFKESKGAEEVARFDSEIGKDLSAESSGEVCNSAWSSMLPEILSEIIRRVEVSDELWPHRQNVVACACVCKRWRDLAKEIVAAPSLSGKITFPSCLKQPGPRDLPHQCIIKRNKKTSTFYLHLALSQSFTDKGKFLLAARRNRHGAHTEYIISLDAEDISQGSNAYVGKLSSDFIGNNFTIYDSQPPHNGAKPSSSKASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMMCLLKCPWLGETALDKPLEPSNTEKSDFSSPGFTILKNKAPRWHQHLQCWCLNFHGRVTVASVKNFQLIATTDQSQPGGKGDEETVLLQFGKVSDNLFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1905374 1908302 + Bpe023932.1 Bpe09g00261 108661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00261 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Bpe09g00261 377 ProSitePatterns Tub family signature 1. 305 318 IPR018066 -
Bpe09g00261 377 SUPERFAMILY F-box domain 50 93 IPR036047 GO:0005515
Bpe09g00261 377 Gene3D Tubby Protein; Chain A 106 377 IPR025659 -
Bpe09g00261 377 Pfam F-box domain 50 96 IPR001810 GO:0005515
Bpe09g00261 377 Pfam Tub family 111 372 IPR000007 -
Bpe09g00261 377 MobiDBLite consensus disorder prediction 199 218 - -
Bpe09g00261 377 PRINTS Tubby superfamily signature 287 304 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 165 181 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 181 205 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 230 257 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Bpe09g00261 377 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 377 - -
Bpe09g00261 377 PANTHER TUBBY-RELATED 1 377 - -
Bpe09g00261 377 Gene3D - 44 101 - -
Bpe09g00261 377 SUPERFAMILY Tubby C-terminal domain-like 99 377 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00261 K19600 TUB, TULP; tubby and related proteins - mnt:21387850 577.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00349 Bpe-Chr7:2736000 Bpe09g00261 Bpe-Chr9:1905374 4.34E-122 dispersed
Bpe09g00261 Bpe-Chr9:1905374 Bpe12g00743 Bpe-Chr12:12958388 4.05E-75 dispersed
Bpe09g00261 Bpe-Chr9:1905374 Bpe04g01142 Bpe-Chr4:10497415 5.96E-127 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g106 . . . . Bpe09g00261 . . Bma13g00928 Cmo16g00475 Cmo04g00614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00732 . . . . . . . . . Cma04g00575 Cma16g00440 Car04g00544 . Cpe14g00370 Cpe01g00519 . . . . . . . . . . . . . . . Csa04g00806 Chy06g01174 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g00406 . 1 461 TUB Transcription Factor Family AT1G76900 65.4 4.3e-168 587.8
Bpe02g00213 BCT 1 424 TUB Transcription Factor Family AT1G76900 69.2 6.2e-167 583.9
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT1G76900 67.5 7.6e-165 577.0
Bpe04g00353 BCT 1 443 TUB Transcription Factor Family AT1G76900 65.7 3.8e-164 574.7
Bpe12g00743 . 5 376 TUB Transcription Factor Family AT1G76900 54.8 3.7e-119 425.2
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT1G76900 50.3 3.4e-117 418.7
Bpe05g00406 . 208 461 TUB Transcription Factor Family AT1G25280 72.3 3.8e-100 361.3
Bpe07g00349 . 179 432 TUB Transcription Factor Family AT1G25280 72.7 6.5e-100 360.5
Bpe04g00353 BCT 193 443 TUB Transcription Factor Family AT1G25280 64.8 1.1e-91 333.2
Bpe02g00213 BCT 173 424 TUB Transcription Factor Family AT1G25280 68.4 1.5e-91 332.8
Bpe12g00743 . 138 376 TUB Transcription Factor Family AT1G25280 67.5 1.3e-84 309.7
Bpe04g01142 . 156 387 TUB Transcription Factor Family AT1G25280 53.6 6.4e-71 264.2
Bpe04g00217 BCT 177 414 TUB Transcription Factor Family AT1G25280 54.7 2.5e-67 252.3
Bpe02g00385 BCT 160 392 TUB Transcription Factor Family AT1G25280 53.5 5.8e-64 241.1
Bpe04g01142 . 98 387 TUB Transcription Factor Family AT5G18680 62.8 1.2e-97 353.2
Bpe05g00852 . 98 403 TUB Transcription Factor Family AT5G18680 58.8 6.0e-94 340.9
Bpe02g00213 BCT 112 424 TUB Transcription Factor Family AT5G18680 50.8 1.2e-81 300.1
Bpe07g00349 . 111 432 TUB Transcription Factor Family AT5G18680 51.2 9.9e-81 297.0
Bpe04g00217 BCT 114 414 TUB Transcription Factor Family AT5G18680 51.5 6.0e-78 287.7
Bpe12g00743 . 142 376 TUB Transcription Factor Family AT5G18680 52.3 1.4e-58 223.4
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT2G18280 56.9 2.8e-123 438.7
Bpe02g00213 BCT 1 424 TUB Transcription Factor Family AT2G18280 52.9 5.1e-117 417.9
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT2G18280 51.3 2.8e-115 412.1
Bpe04g00353 BCT 1 443 TUB Transcription Factor Family AT2G18280 50.4 4.8e-115 411.4
Bpe05g00852 . 1 403 TUB Transcription Factor Family AT2G18280 52.0 2.2e-112 402.5
Bpe04g01142 . 1 387 TUB Transcription Factor Family AT2G18280 52.6 3.8e-112 401.7
Bpe02g00385 BCT 1 392 TUB Transcription Factor Family AT2G18280 51.4 3.3e-100 362.1
Bpe04g01142 . 1 387 TUB Transcription Factor Family AT2G47900 68.2 7.7e-161 563.5
Bpe05g00852 . 1 403 TUB Transcription Factor Family AT2G47900 64.9 1.3e-155 546.2
Bpe04g00353 BCT 1 443 TUB Transcription Factor Family AT2G47900 54.6 2.0e-132 469.2
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT2G47900 55.2 2.9e-131 465.3
Bpe02g00213 BCT 1 424 TUB Transcription Factor Family AT2G47900 56.0 9.2e-130 460.3
Bpe05g00406 . 1 461 TUB Transcription Factor Family AT2G47900 52.1 7.3e-127 450.7
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT2G47900 52.7 9.0e-117 417.2
Bpe10g00587 . 80 298 TUB Transcription Factor Family AT1G16070 59.6 7.0e-71 264.2
Bpe02g00213 BCT 65 424 TUB Transcription Factor Family AT1G43640 69.1 8.2e-146 513.5
Bpe07g00349 . 64 432 TUB Transcription Factor Family AT1G43640 66.4 5.0e-143 504.2
Bpe05g00406 . 65 461 TUB Transcription Factor Family AT1G43640 62.8 4.4e-139 491.1
Bpe04g00353 BCT 65 443 TUB Transcription Factor Family AT1G43640 62.0 3.7e-138 488.0
Bpe04g01142 . 47 387 TUB Transcription Factor Family AT1G43640 51.6 7.8e-104 374.0
Bpe05g00852 . 47 403 TUB Transcription Factor Family AT1G43640 50.3 5.2e-100 361.3
Bpe04g00217 BCT 67 414 TUB Transcription Factor Family AT1G43640 51.2 3.2e-97 352.1
Bpe12g00743 . 71 376 TUB Transcription Factor Family AT1G43640 53.1 2.0e-96 349.4
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT1G47270 61.3 5.9e-134 474.2
Bpe02g00213 BCT 48 424 TUB Transcription Factor Family AT1G47270 57.5 1.1e-116 416.8
Bpe02g00385 BCT 31 392 TUB Transcription Factor Family AT1G47270 57.5 1.2e-113 406.8
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT1G47270 50.9 5.4e-111 397.9
Bpe05g00406 . 48 461 TUB Transcription Factor Family AT1G47270 50.7 4.7e-107 384.8
Bpe04g01142 . 1 387 TUB Transcription Factor Family AT1G47270 50.6 8.9e-106 380.6
Bpe09g00261 . 1 377 TUB Transcription Factor Family AT1G53320 68.3 7.7e-147 516.9
Bpe04g01142 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 6.2e-96 347.4
Bpe05g00852 . 98 403 TUB Transcription Factor Family AT3G06380 59.3 4.1e-92 334.7
Bpe02g00213 BCT 116 424 TUB Transcription Factor Family AT3G06380 51.9 1.8e-79 292.7
Bpe04g00217 BCT 118 414 TUB Transcription Factor Family AT3G06380 53.0 7.6e-78 287.3
Bpe12g00743 . 138 376 TUB Transcription Factor Family AT3G06380 52.1 2.4e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013611 0 1 1 1 1 0 2 0 0 0 1 0 2 1 1 2 0 0 2 0 1 1 1 1 1 1 1 2 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21864 PF01167 Tub 2.30E-100 CL0395 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00261 Bpe_Chr09 FPKM 1.036513 1.451148 0.682221 0.899524 24.874432 21.856503 23.427874 0.0 0.135282 0.0