Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00261 ATGTCTCTTCGCAAAGCTTTGTTGTCTCGGCTTTCGTCTTCCAAGTCTTTTAAGGAATCCAAAGGTGCGGAAGAGGTTGCGCGTTTCGATTCGGAGATCGGGAAAGATTTGTCAGCTGAGTCTTCTGGCGAAGTTTGTAACTCTGCCTGGTCTTCGATGCTTCCGGAGATTCTCAGCGAGATTATAAGGCGCGTTGAGGTTAGCGACGAGCTGTGGCCTCACAGACAGAACGTTGTTGCTTGTGCTTGTGTGTGCAAGCGCTGGAGGGATCTTGCGAAGGAAATCGTCGCGGCTCCTTCGCTTAGTGGCAAAATCACTTTCCCTTCTTGTCTTAAGCAGCCTGGGCCACGCGACCTTCCGCATCAATGTATTATAAAACGAAACAAGAAAACCTCAACTTTTTATCTCCATCTCGCTCTTAGTCAATCATTCACGGATAAGGGAAAGTTTCTCTTAGCTGCACGGAGAAATAGGCATGGAGCTCACACAGAGTATATTATTTCTCTTGATGCTGAGGACATATCTCAAGGAAGCAATGCTTATGTAGGAAAATTAAGCTCGGACTTTATTGGCAACAATTTCACAATTTATGATAGCCAACCACCACACAATGGTGCAAAGCCATCAAGCAGTAAAGCCAGCCGTCGTTTTGCAAGCAAGCAAATAAGCCCCCAAGTTCCTGCTGGCAACTTTGAGGTTGGGCAAGTCTCTTACAAATTCAACCTTTTGAAATCAAGAGGTCCAAGAAGGATGATGTGCTTGTTGAAATGCCCATGGTTGGGAGAAACTGCCCTAGATAAACCATTGGAGCCCTCCAACACAGAGAAATCAGATTTTTCCTCTCCAGGTTTCACGATCTTGAAAAACAAAGCTCCAAGATGGCATCAGCATCTACAATGCTGGTGTTTGAATTTCCATGGGCGAGTGACGGTGGCTTCAGTGAAGAACTTTCAACTCATTGCCACCACTGACCAGAGCCAACCTGGTGGAAAAGGAGACGAAGAAACAGTTCTCCTCCAGTTTGGTAAAGTGAGCGACAATCTCTTCACCATGGATTACAGGCAGCCATTGTCGGCATTTCAAGCTTTTGCCATTTGCCTCACCAGCTTCGGCACAAAACTTGCCTGCGAGTAG 1134 46.38 MSLRKALLSRLSSSKSFKESKGAEEVARFDSEIGKDLSAESSGEVCNSAWSSMLPEILSEIIRRVEVSDELWPHRQNVVACACVCKRWRDLAKEIVAAPSLSGKITFPSCLKQPGPRDLPHQCIIKRNKKTSTFYLHLALSQSFTDKGKFLLAARRNRHGAHTEYIISLDAEDISQGSNAYVGKLSSDFIGNNFTIYDSQPPHNGAKPSSSKASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMMCLLKCPWLGETALDKPLEPSNTEKSDFSSPGFTILKNKAPRWHQHLQCWCLNFHGRVTVASVKNFQLIATTDQSQPGGKGDEETVLLQFGKVSDNLFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1905374 1908302 + Bpe023932.1 Bpe09g00261 108661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00261 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Bpe09g00261 377 ProSitePatterns Tub family signature 1. 305 318 IPR018066 -
Bpe09g00261 377 SUPERFAMILY F-box domain 50 93 IPR036047 GO:0005515
Bpe09g00261 377 Gene3D Tubby Protein; Chain A 106 377 IPR025659 -
Bpe09g00261 377 Pfam F-box domain 50 96 IPR001810 GO:0005515
Bpe09g00261 377 Pfam Tub family 111 372 IPR000007 -
Bpe09g00261 377 MobiDBLite consensus disorder prediction 199 218 - -
Bpe09g00261 377 PRINTS Tubby superfamily signature 287 304 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 165 181 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 181 205 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 230 257 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Bpe09g00261 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Bpe09g00261 377 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 377 - -
Bpe09g00261 377 PANTHER TUBBY-RELATED 1 377 - -
Bpe09g00261 377 Gene3D - 44 101 - -
Bpe09g00261 377 SUPERFAMILY Tubby C-terminal domain-like 99 377 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00349 Bpe-Chr7:2736000 Bpe09g00261 Bpe-Chr9:1905374 4.34E-122 dispersed
Bpe09g00261 Bpe-Chr9:1905374 Bpe12g00743 Bpe-Chr12:12958388 4.05E-75 dispersed
Bpe09g00261 Bpe-Chr9:1905374 Bpe04g01142 Bpe-Chr4:10497415 5.96E-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21864 PF01167 Tub 2.30E-100 CL0395 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00261 K19600 - mnt:21387850 577.785