Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00269 ATGGTTTTCCGGCAAAGTAACTTCTCAGTCGGTCGTAGTTTTCCGCTCAAAGATATTATTTTTCTTCTTTTTCTTCTTCTCCGTCATGCAAATGCAGCTGAACCGGATTGTGATATCTTCGCCGGAAGTTGGATAATGGATCCGGCGTACCCCCTCTACGATTCCTCCAAGTGTCCCTTCATCGAACGGGAATTCAGTTGCTTGAAGAACGGCCGGTCTGATCTGAACTACACTCAGTTCCGGTGGCAGCCATTGCATTGCGATTTACCCAGATTTAATGGGAAAGAATTTTTGGAGAAATATAGAGGAAAAAGTGTGATGTTTGTCGGAGATTCATTGAGTAAAAATCAATGGGAGTCGTTTTCTTGCATGCTGCACTCGGCCGTACCTGATTCTAACTACTCACTCACAAGAGTTGGAGATGTTTCCACTCTCACGTTCTTGGACTTCGAGGCTAAAGTGATGTTGGATCGAAGTCTATATCTAGTTGATATTGTGCGAGAAGAAATTGGTAGGGTTTTGAACATCGACTCAATTGAAAGTGGCCAGTTATGGGAAAGAATGGACATGCTCATCTTTAACACCTGGCATTGGTGGAATCGCAGAGGACCTTCTCAACCGTTCGATTACATCCGAGAAGGGGAGAAGATAACGAAAGACATGAATAGAATGGTTGCTTTCGAGAAAGCTCTAACGACTTGGGGTAAATGGATCGATCAAAACATCGATCCTTCTAAAACTTCGGTTTTCTTCCAAGGAATTTCTCCTTCCCATTACAAATGCTCCCTGACAGTCGCCATAACCGGAGAGGATAGAGCTTCCGCCATAGCCATCTGGAGTGTAATTTACGACAAGGGTTTGGAATCTCTCGGGTCGACCCGAACAAACCCGACTTTCCGGGTCAAGTTCCTTCTTCCTCACTGTCAACGCTCAACGTTGAAAACCCACAACCCAAAAGGAAAAGAAATGGCGATGTCAATGTCAACGCTCTTTCACATTAAACCCTTTCCAATTCCTTCCCTCCAATTCAGCCGTTTTCCTCTCTCCTCAGTCCTCAAGAAATCTCTAATTCTCCGTCCTAACCCTAGCAGATACCCGAGGATGACGGTCCAAGTTCAGGCTGCTAATTTGCAGGACGTGGTGTCGCAAACGATCAGCTTCGTCCGATCAAATCCTCCCACTTGGCATTCTGCTCTTCTCAGCAACCTGATTATCTTCGTTCTGGGTTCGCCGCTACTGGTATCGGGGCTGTCGATTTCCGGTATTGGCGCCGCTTTCTTGCTCGGAACTCTCACATGGCGTGCTTTTGGACCCTCTGGTTTCCTTCTCGTTGCCACTTACTTCGTCATTGGAACGGCAGCAACAAAAGTGAAAATGACTCAAAAGGAGGCACAAGGAGTAGCTGAGAAGAGAAAAGGAAGAAGGGGACCTGGCAGTGTGCTTGGATCGAGCGCAGCCGGTTGTGTCTGTGCTTTTCTCATGATAAACAGAGTTGGCGGAGAAGCTTTTTCTCGGCTCTGGCAGCTTGGGTTTGTTGCCAGTTTTTGTACTAAGTTGAGCGATACTGTCTCTAGCGAGATAGGGAAGGCATATGGTAAAACGACGTACCTAGTAACAACATTTAAGATCGTTCCGAGAGGAACTGAAGGAGCTGTCAGTTTGGAAGGAACCTTTGCAGGAATTTTGGCTTCGTTTGCTCTTTCCTTCAGCGCTTTTCTAATGGGTGAGGTGAATGCATCTGAAGCCTTGATATGTGTCATAGCTGCTCAGATTGCAAATCTTGGGGAGAGCTTTATAGGTGCTACACTTCAAGAGAAGGAAGGATTTCAATGGCTCAACAATGATGCAGTCAACATCATCAACATAACGATGGGGAGCATTTTGGCAGTCATCATGCGACAAATCACACTCGAAAATTGA 1920 45.99 MVFRQSNFSVGRSFPLKDIIFLLFLLLRHANAAEPDCDIFAGSWIMDPAYPLYDSSKCPFIEREFSCLKNGRSDLNYTQFRWQPLHCDLPRFNGKEFLEKYRGKSVMFVGDSLSKNQWESFSCMLHSAVPDSNYSLTRVGDVSTLTFLDFEAKVMLDRSLYLVDIVREEIGRVLNIDSIESGQLWERMDMLIFNTWHWWNRRGPSQPFDYIREGEKITKDMNRMVAFEKALTTWGKWIDQNIDPSKTSVFFQGISPSHYKCSLTVAITGEDRASAIAIWSVIYDKGLESLGSTRTNPTFRVKFLLPHCQRSTLKTHNPKGKEMAMSMSTLFHIKPFPIPSLQFSRFPLSSVLKKSLILRPNPSRYPRMTVQVQAANLQDVVSQTISFVRSNPPTWHSALLSNLIIFVLGSPLLVSGLSISGIGAAFLLGTLTWRAFGPSGFLLVATYFVIGTAATKVKMTQKEAQGVAEKRKGRRGPGSVLGSSAAGCVCAFLMINRVGGEAFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKIVPRGTEGAVSLEGTFAGILASFALSFSAFLMGEVNASEALICVIAAQIANLGESFIGATLQEKEGFQWLNNDAVNIINITMGSILAVIMRQITLEN 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2003456 2008540 + Bpe023940.2 Bpe09g00269 108669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00269 639 Pfam Integral membrane protein DUF92 407 625 IPR002794 GO:0016021
Bpe09g00269 639 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 41 25 263 - -
Bpe09g00269 639 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 25 263 IPR029962 GO:0016413
Bpe09g00269 639 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 89 260 IPR026057 GO:0016740
Bpe09g00269 639 Pfam PMR5 N terminal Domain 36 88 IPR025846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00269 - - - mnt:21400509 418.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00507 Bpe-Chr1:3280951 Bpe09g00269 Bpe-Chr9:2003456 2.10E-06 dispersed
Bpe09g00269 Bpe-Chr9:2003456 Bpe15g00156 Bpe-Chr15:12019433 1.45E-96 dispersed
Bpe09g00269 Bpe-Chr9:2003456 Bpe14g00630 Bpe-Chr14:5172036 5.83E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g41 . . . . Bpe09g00269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1025 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008594 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00269 Bpe_Chr09 FPKM 4.768322 4.806019 8.708277 6.609327 6.565112 8.212876 6.761773 5.722002 4.132247 4.968845