Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00270 ATGAAGATTCAATGCAATGTCTGCGAGGCAGCGGAGGCGCACGTTTTATGCTGCGCGGACGAGGCGGCGTTATGCTGGGCTTGCGACGAGAAGGTTCACGCAGCCAACAAGCTGGCCAGCAAGCACCAGAGGGTTCCTCTTTCTGGCTCGTCTTCTCAAATGCCCAAATGTGACATTTGTCAGGAGATGAGTGGCTATATCTTCTGTTTAGAGGATCGAGCTTTACTTTGCCGAAAATGCGATGTCGCAATACACACGGCAAATGCTTTTGTATCGGCTCATCAGAGATTTCTTCTTACTGGTGTGAAAGTAGGTCTTGAACCCACTGTACCTCTTGCTTCCTCTTTCGAGTTGAAGCCTCAAAGTAGAGAGAAAACTTTGGAATCAAAGGGTTGCTCAGGCCCGCAAAGAGGCTTCTCAAATCAGTCATCTGGTGAATTCAGTCAACAATTGCCTGTAAATCGTCATGGGATCGGAGACTTCGCACCAACTGAGGCTCCTACGCATACCGGAGGATTTGTATCTGGTGGGCTTCCTCAGTGGCATTTAGACGAGTTTGTGGGTATGACTGGATTCAGTCAGAATTACCGGCCCGGCGATATGGACAATGGTTCATCTAAGGCTGATAGTGGTAAGCTGGGAGATTCCGACTCATCCGTTCTAAGAACAGGCGACAACGATCTGGACGACGGCGACGAGTGCTTGGGTCAGGTTCCGGATTCATCTCGAGCCGTTCCTCACAATCCGTCTCCACCTACAGCTTCAGGCTTGTACTGGCCGAGAAATTACTACAATTCATGGGATACCACAGCCTATGTTCCCGACATATACAGCTCATCGCCAGAGCAGAAGCCCCACCATTATCGACATGGTGGTTTGGCATCAAAACGGCGGAGACAATTC 903 49.94 MKIQCNVCEAAEAHVLCCADEAALCWACDEKVHAANKLASKHQRVPLSGSSSQMPKCDICQEMSGYIFCLEDRALLCRKCDVAIHTANAFVSAHQRFLLTGVKVGLEPTVPLASSFELKPQSREKTLESKGCSGPQRGFSNQSSGEFSQQLPVNRHGIGDFAPTEAPTHTGGFVSGGLPQWHLDEFVGMTGFSQNYRPGDMDNGSSKADSGKLGDSDSSVLRTGDNDLDDGDECLGQVPDSSRAVPHNPSPPTASGLYWPRNYYNSWDTTAYVPDIYSSSPEQKPHHYRHGGLASKRRRQF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2009553 2012206 - Bpe026214 Bpe09g00270 108670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00270 301 MobiDBLite consensus disorder prediction 194 255 - -
Bpe09g00270 301 MobiDBLite consensus disorder prediction 127 147 - -
Bpe09g00270 301 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bpe09g00270 301 Gene3D Classic Zinc Finger 1 93 - -
Bpe09g00270 301 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 300 - -
Bpe09g00270 301 CDD Bbox1_BBX-like 5 47 - -
Bpe09g00270 301 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bpe09g00270 301 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bpe09g00270 301 MobiDBLite consensus disorder prediction 278 301 - -
Bpe09g00270 301 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 300 - -
Bpe09g00270 301 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Bpe09g00270 301 MobiDBLite consensus disorder prediction 121 147 - -
Bpe09g00270 301 CDD Bbox1_BBX-like 56 99 - -
Bpe09g00270 301 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00270 - - - csv:101209756 392.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00902 Bpe-Chr4:6044861 Bpe09g00270 Bpe-Chr9:2009553 3.07E-45 dispersed
Bpe05g00323 Bpe-Chr5:16885232 Bpe09g00270 Bpe-Chr9:2009553 2.11E-35 dispersed
Bpe05g00975 Bpe-Chr5:22602529 Bpe09g00270 Bpe-Chr9:2009553 3.44E-43 dispersed
Bpe09g00270 Bpe-Chr9:2009553 Bpe15g00849 Bpe-Chr15:18497243 2.95E-37 dispersed
Bpe11g00513 Bpe-Chr11:3964345 Bpe09g00270 Bpe-Chr9:2009553 1.13E-08 dispersed
Bpe03g00871 Bpe-Chr3:28466255 Bpe09g00270 Bpe-Chr9:2009553 1.27E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g32 . . . . Bpe09g00270 . Bma10g00461 Bma13g00920 Cmo16g00458 Cmo04g00707 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1023 . . . . . . Blo10g00720 . . . . . . . . . Cma04g00659 Cma16g00426 . . Cpe14g00359 Cpe01g00595 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01781 . 1 376 Orphan Transcription Factor Family AT5G61850 61.8 8.2e-121 430.6
Bpe15g01214 . 1 304 Orphan Transcription Factor Family AT5G61850 57.9 8.8e-83 304.3
Bpe04g00902 CCT 1 157 Orphan Transcription Factor Family AT1G06040 64.3 2.3e-53 205.3
Bpe05g00975 CCT 1 153 Orphan Transcription Factor Family AT1G06040 63.1 1.7e-51 199.1
Bpe09g00270 . 1 110 Orphan Transcription Factor Family AT1G06040 64.5 1.4e-37 152.9
Bpe03g00871 . 1 106 Orphan Transcription Factor Family AT1G06040 66.0 2.3e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21866 PF00643 zf-B_box 1.70E-06 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00270 Bpe_Chr09 FPKM 4.376917 4.646339 9.552505 9.178098 6.775169 6.565464 9.030906 6.499211 5.499381 5.828146