Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00271 ATGGCTGAATATACCCCAAAGAACATCCTCATAACTGGGGCTTCTGGTTTTATTGCATCTCATGTTGCCAATCGGCTTGTCAAACTCTACCCAGACTACAAGATTGTTGTGCTTGACAAGCTTGATTACTGTTCTAATCTGAAGAATCTTCTCCCTTCGAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGCAGCGCCGACCTGGTCAATTATCTCCTCATCACCGAGTCGATCGACACAATTATGCATTTTGCCGCACAAACCCACGTCGATAACTCTTTCGGTAATAGTTTCGAGTTCACGAAGAACAACATTTATGGAACTCACGTTCTTCTCGAAGCTTGCAAAGTGACTGGCCAAGTCCGAAGGTTCATCCATGTCAGCACCGACGAGGTCTACGGGGAGACAGATGAGGATGCAGTCGTGGGAAATCACGAGGCCTCTCAACTCCTTCCAACAAATCCTTACTCGGCAACAAAAGCCGGAGCCGAAATGCTTGTGATGGCGTATGGCAGGTCGTATGGATTGCCTGTGATCACGACGAGAGGCAATAATGTTTACGGGCCGAATCAATTTCCGGAGAAATTGATTCCGAAATTCATCCTCTTGGCCATGGAAGGAAAGCCTCTTCCGATTCATGGAGATGGATCAAACGTCAGGAGTTATCTGTATTGCGAGGACGTTGCTGAGGCTTTTGAAGTCGTTCTTCACAAAGGCGAAGTCGGTCATGTTTACAATATCGGAACGAAGAAAGAACGGAGAGTTATAGATGTTGCTGAAGATGTTTGCAGACTCTTCTCAATGGATCCAGCCGAGAGTATCAAATTTGTCGAAAACAGGCCTTTTAACGACCAGCGATACTTTCTGGATGATCAAAAACTCAAAAACATCGGATGGTCCGAGCGGACTACTTGGGAGGAAGGACTAAAGAAGACTATGGATTGGTATATCAAAAATCCTGATTGGTGGGGTGATGTGTCTGGGGCTTTGCTTCCACACCCGAGAATGCTTATGATGCCAGGCGGATTCGAAAGGCATCAGGACGGATCAGAAGAGAAAAAACCGGCTTCTTCAGCCTCGAGCAATCCTCCTCTGGCGATTCCATCTCCCTCGACGAAGTCTCCTCCTCGAGAGACACCTTTCAAGTTCTTGATCTACGGCAGAACTGGGTGGATCGGCGGTCTTATTGGACAAATATGCCAAAAGCAAGGCATTTCGTATGAATACGGAAAAGGGCGTCTGGAGGATCGATTGTCACTCGTATCTGATGTTCGGAATGTTAAACCCACTCATGTTTTCAATGCTGCTGGTGTGACTGGAAGACCGAACGTCGATTGGTGTGAAAGTCATAAAACGGAAACGATTCGAACGAATGTTGTCGGAACTCTAAACTTAGCTGATGTTTGCAGGGAAAACGGACTGCTTATGATGAATTTTGCTACTGGCTGCATATTTGAATATAATCATGCTCATCCTCAAGGATCTGGAATCGGATTTACCGAGGAAGACACGCCCAATTTTACGGGTTCTTTTTACTCGAAAACGAAGGCAATGGTGGAGGAGCTCTTGAAAGAATACGAGAATGTCTGCACTCTAAGAGTTCGCATGCCGATATCATCCGATCTGAACAACCCGAGAAACTTCATCACCAAAATCTCTCGATACAACAAAGTCGTGAACATCCCAAACAGCATGACCGTCTTGGACGAGCTCCTCCCGATTTCAATCGAGATGGCAAAACGAAACCTGAAAGGTATTTGGAACTTCACTAATCCCGGCGTCGTGAGCCATAACGAGATTCTCGAAATGTACAAGAATTACATCGACTCCACGTTCAAGTGGGAGAATTTCACGCTCGACGAGCAAGCGAAAGTGATCGTTGCTCCGAGAAGCAACAACGAAATGGATGCATCCAAGTTGAAGAAGGAGTTCCCCGAATTATTATCGATAAAAGAGTCGTTGATCAAGTACGTCTTCGAATCGAACAAGAAAACTACTTCTGCATAA 2016 45.68 MAEYTPKNILITGASGFIASHVANRLVKLYPDYKIVVLDKLDYCSNLKNLLPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQVRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMEGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVIDVAEDVCRLFSMDPAESIKFVENRPFNDQRYFLDDQKLKNIGWSERTTWEEGLKKTMDWYIKNPDWWGDVSGALLPHPRMLMMPGGFERHQDGSEEKKPASSASSNPPLAIPSPSTKSPPRETPFKFLIYGRTGWIGGLIGQICQKQGISYEYGKGRLEDRLSLVSDVRNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVVGTLNLADVCRENGLLMMNFATGCIFEYNHAHPQGSGIGFTEEDTPNFTGSFYSKTKAMVEELLKEYENVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYKNYIDSTFKWENFTLDEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYVFESNKKTTSA 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2015695 2017800 - Bpe023941.1 Bpe09g00271 108671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00271 671 Gene3D - 9 313 - -
Bpe09g00271 671 MobiDBLite consensus disorder prediction 343 381 - -
Bpe09g00271 671 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Bpe09g00271 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
Bpe09g00271 671 Gene3D - 380 671 - -
Bpe09g00271 671 PANTHER UDP-GLUCOSE 4,6-DEHYDRATASE 1 667 - -
Bpe09g00271 671 CDD dTDP_HR_like_SDR_e 385 657 - -
Bpe09g00271 671 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Bpe09g00271 671 Pfam RmlD substrate binding domain 385 556 IPR029903 -
Bpe09g00271 671 Gene3D - 200 322 - -
Bpe09g00271 671 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 667 - -
Bpe09g00271 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 382 660 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00271 K12450 RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76] - jre:109011912 1210.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g00995 Bpe09g00271 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00995 Bpe-Chr8:12289233 Bpe09g00271 Bpe-Chr9:2015695 0 dispersed
Bpe09g00271 Bpe-Chr9:2015695 Bpe11g00445 Bpe-Chr11:3448482 0 dispersed
Bpe14g00288 Bpe-Chr14:2856596 Bpe09g00271 Bpe-Chr9:2015695 2.09E-12 dispersed
Bpe03g00868 Bpe-Chr3:28453438 Bpe09g00271 Bpe-Chr9:2015695 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g26 . . . . Bpe09g00271 Bpe08g00995 Bma10g00464 Bma13g00919 . Cmo04g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00719 . Bda12g00810 . . Bma07g01155 . . . . Cma04g00655 . . . . Cpe01g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000921 5 5 3 5 5 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 3 2 1 3 2 3 8 2 0 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00271 Bpe_Chr09 FPKM 4.535525 5.827214 49.275013 48.011284 1.33315 1.327286 1.284153 7.470751 7.38752 7.321061