Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00290 ATGACGGATCGTAGCTCTCTGTCTTGCAATCCAAATCAAGGTCGGTCCATGCTTGGATTTTCACTTACATCTCCTGATTTGGTGGTCTGTGCTGGTTCTCCAGAAATTCCTGGAGTTAGTTACATTGATTCTCCAGAGTTAATGGATGTCAAACGTAACAAAGAAATTGAATCTTCCGTGGAGCTCTCTTTTGAAAATAGCTTCCATGAAAGCAAAAGAAAATTTTCAAAAAGAACCCCATCCGTCAAATTTGCTGCATTCTCTCAAATTGTTGAAGAACATCTTTCTCCAGAATCTTCCTTTGAGCTACCTCAGCCTCCTGAGGCTGAAGATACAATACCAAAAGATCTTCCCGTTATAAGCATCAATGTAGGGTCCTCAAATGGTGCAGTGACTTTAGATGGGGTCAATTACTTGGAAGACAATTGGTATGCAGGTGGTAGCACTGTAAGGTCCGAGGAAATTGATTTTCCATTGTACCAAACAGCTCGATTCGGTAACTTTTCGTACAGCATTCCGGGACTGGAAGGCGGGAGTTATGTTGTTGATCTGCATTTTGCTGAGATTGTTTTTACCAATGGTCCAGCAGGGCTGAGAGTATTTGACGTTCTTTTACAAGAGAAAAAGGTTTATTCTTGCCTGGATATATATGCTTCTGTTGGTGGGAACATGCCTCATGTGATATTAGACCTTAAAACCACCATTGATGCGGGGGAGGACTTAAAAATTAGTTTCGAAGGAGGGATGGGAAGTCCATTACTCTGCGGAATTTCAATTAGAAAATATTTCCCTTCCAGATCTGAAGAAGTTGAATTATCCAAAATCATCAGAAGATCTCAACTTGCAAAATCTGAGGAACCAAAGGATAATGCCGACTTTAGGGGGGATGAAGAGTATCAAGTGCTCCAAAAAAGGTATGAGCTTCAGAATCGTGAGCTATCAGAGGCAAGAAAGAGAATGGGCGAATTGAAGAAGGAAAACCAGCAGAAGAGCAGAGAGTGTCAAGAAGCTTGGAAGTCTTTGCAAGAACTCCAGAATGAACTCATGCGTAAATCAATGCACGTCGGATCTTTGGCTTTTGCCATTGAGGGACAAGTGAAAGAGAAGGGCAAGTGGTTTTCCTCACTGAGAGACCTGACAAGAAAGCTGAAGATTATGAAAATGGAACACATTAAGCTATCGGAGGAGGTTTTGGGATATAAGAAATCCCTCACTGATATAAATGAATTGGCATCTACCATTCAAACTGCTTTCAATCAGCAAGTAGACGTGTATGGGGATCTAAAGACCAAGTTCATTGAAGGGATAAAGGAAAGGAAAGAGCTTTATAACAAGATTTTGGAGACAAAAGGAAATATTAGGGTCTTCTGTCGATGTAGGCCTTTAAATTCAGAAGAAATTGCAAATGGAGCTTCAATGTCGTTTGATTTTGAATCAGCAAAAGACGGTGAGCTCAGTGTAAAGTCCAATGGGGTCCCCAAAAGAATTTATAAGTTTGACGCCGTGTTTGGTCCCTTAGCAAGTCAAGGTGATGTTTTTGAAGATACAGCTCCATTTGCAATTTCTGTTTTAGACGGATACAATGTGTGCATATTTGCTTATGGACAAACTGGAACGGGAAAAACATTTACAATGGAGGGTTCAAAAGATGCTCGTGGTGTCAATTTTAGGACTCTTGAAGAACTGTTTAGCCTAATCAAGGAAAGAGAAAAACTATACAGATATAGTGTATCTGTGTCTGTCTTGGAAGTGTATAATGAGCAAATTCGAGACTTGCTAGTTTCAGGAGGATCTCAGTCAGGAGTAGCAACAAAACGTCTTGAAGTAAGGCAAGTGAGCGAAGGAATACATCATGTTCCAGGCCTTGTTGAGGCGCCGGTGAATAACATGAGTGAAGTTTGGGAAGTTCTACAAACCGGCAGCAATGCAAGAGCAGTGAGCTCGACAAATGCCAACGAATATAGCAGCCGATCCCATTGCATGCACTGTGTGATGGTAAAAGGCGAGAATTTGCTTAATGGGGAATGCACAAGTAGCAAACTATGGTTGGTAGATTTAGCAGGAAGCGAGCGAATAGCCAAGGCAGAAGTACTAGGTGATCGTCTTAAGGAAACCCAAAATATTAACAGGTCTCTCTCTGCACTTGGTGATGTCATATCTTCTCTAGCTACCAAAAGTCCACACATCCCTTTCAGGAATTCAAAGCTTACACATTTGCTTCAAGACTCCCTAGGGGGAGATTCAAAGACACTCATGTTTGTTCAAATCAGTCCAAACGAAAATGACTTGAGCGAGACGCTTTGCTCACTAAACTTTGCGAGTAGAGTACGAGGAATTGAATTGGGTCCTGCAAAGAGACAATTAGACACATCTGAATTTTTGAAATGCAAACAGATGGCTGAGAGAACCAAGCTAGATATTAAGTGTAAAGATGTTCAAATCAGGAAGATGGAGGAAACAATTCATGGTTTTGAATTAAAGGTGAAGGAAAAGGATCTTAAAAACAAGAACTTACAAGACAAGATAAAAGAATTGGAATCACAACTTTTGATCGAAAGAAAGCTAGCACGTCAACATGTAGACATGAAGATTGCCGAGCAACAACAGCAGATAAAAAATCAGCTTGAAGAAGAAACCATTGGACCGCTCAGACCAAGAATTGGCAACAGACAATTAGGAGGCAACAAAAACATCATTGAATATCTGAACTTTGCAAAGGAGCATGGAAGTTTGTCTAATCCTTTATTGGACAATAACAACAGCTTCAAACCTTCATGCCCTCTTCCTCCAACCGATGGATTTGTCAAGTACATCGATTCAGAAGAGAAGGAGAACATTCCCGAAATAACTGACCGACCTCTACTTCCGAAGCGATCCGGAAGAGTCTCTATGTGCACGGTCTCTCGTCACCTTCCATCAGCTGTGGCTCCGGCTCCGGCTCCGGCACCTAGAAGAAACTCTTTGATCCCACTCCCGAGTGCACTAAACTTTAAGCTTCCACCACTTGTGCCATTGCCACTACTTGAAGCTGACCAGAAAGAAGAAACAGATGGGTCAGATAACTGGCTGCCTGAAAATATATCTTGTGAAAGTCCTAAAGTCCAAAAGTATGGAGGAAAGAACCTGAGCAGCATATTGAGAAGAAGCCTCCAAAGGAAGATTAAAAAGTCTCCCATGCAGCAACACATGAAGAAAGGTGGCATCAACTTGGGAACCGAAAAGGTGAGAGTGTCTATCGGAAGCCGAGGGCGGCTCGGGCTAGCCCACCGAGCTTTTTTGGTCAACGGGAGAGGAGGAAACAAAGAAGCACAGAGTAAGCAGATTCAAAAAGAGAAGGAGAGGGGATGGAATATCGGAAATGTGGTTGTAAGAAACCTAATGTAA 3384 41.93 MTDRSSLSCNPNQGRSMLGFSLTSPDLVVCAGSPEIPGVSYIDSPELMDVKRNKEIESSVELSFENSFHESKRKFSKRTPSVKFAAFSQIVEEHLSPESSFELPQPPEAEDTIPKDLPVISINVGSSNGAVTLDGVNYLEDNWYAGGSTVRSEEIDFPLYQTARFGNFSYSIPGLEGGSYVVDLHFAEIVFTNGPAGLRVFDVLLQEKKVYSCLDIYASVGGNMPHVILDLKTTIDAGEDLKISFEGGMGSPLLCGISIRKYFPSRSEEVELSKIIRRSQLAKSEEPKDNADFRGDEEYQVLQKRYELQNRELSEARKRMGELKKENQQKSRECQEAWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKGKWFSSLRDLTRKLKIMKMEHIKLSEEVLGYKKSLTDINELASTIQTAFNQQVDVYGDLKTKFIEGIKERKELYNKILETKGNIRVFCRCRPLNSEEIANGASMSFDFESAKDGELSVKSNGVPKRIYKFDAVFGPLASQGDVFEDTAPFAISVLDGYNVCIFAYGQTGTGKTFTMEGSKDARGVNFRTLEELFSLIKEREKLYRYSVSVSVLEVYNEQIRDLLVSGGSQSGVATKRLEVRQVSEGIHHVPGLVEAPVNNMSEVWEVLQTGSNARAVSSTNANEYSSRSHCMHCVMVKGENLLNGECTSSKLWLVDLAGSERIAKAEVLGDRLKETQNINRSLSALGDVISSLATKSPHIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGPAKRQLDTSEFLKCKQMAERTKLDIKCKDVQIRKMEETIHGFELKVKEKDLKNKNLQDKIKELESQLLIERKLARQHVDMKIAEQQQQIKNQLEEETIGPLRPRIGNRQLGGNKNIIEYLNFAKEHGSLSNPLLDNNNSFKPSCPLPPTDGFVKYIDSEEKENIPEITDRPLLPKRSGRVSMCTVSRHLPSAVAPAPAPAPRRNSLIPLPSALNFKLPPLVPLPLLEADQKEETDGSDNWLPENISCESPKVQKYGGKNLSSILRRSLQRKIKKSPMQQHMKKGGINLGTEKVRVSIGSRGRLGLAHRAFLVNGRGGNKEAQSKQIQKEKERGWNIGNVVVRNLM 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2290169 2295170 - Bpe023960.1 Bpe09g00290 108690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00290 1127 CDD KISc_C_terminal 450 781 - -
Bpe09g00290 1127 Coils Coil 828 855 - -
Bpe09g00290 1127 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 21 1106 - -
Bpe09g00290 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 815 IPR027417 -
Bpe09g00290 1127 Gene3D Kinesin motor domain 396 781 IPR036961 -
Bpe09g00290 1127 Coils Coil 299 347 - -
Bpe09g00290 1127 PRINTS Kinesin heavy chain signature 649 666 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe09g00290 1127 PRINTS Kinesin heavy chain signature 680 698 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe09g00290 1127 PRINTS Kinesin heavy chain signature 526 547 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe09g00290 1127 PRINTS Kinesin heavy chain signature 729 750 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe09g00290 1127 PANTHER KINESIN-LIKE PROTEIN KLP-3 21 1106 - -
Bpe09g00290 1127 ProSiteProfiles Kinesin motor domain profile. 452 779 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe09g00290 1127 SMART kinesin_4 450 787 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe09g00290 1127 Pfam Kinesin motor domain 458 779 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe09g00290 1127 Gene3D - 117 262 - -
Bpe09g00290 1127 Coils Coil 376 396 - -
Bpe09g00290 1127 Pfam Malectin domain 120 257 IPR021720 -
Bpe09g00290 1127 Coils Coil 857 877 - -
Bpe09g00290 1127 ProSitePatterns Kinesin motor domain signature. 679 690 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00290 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101222343 1479.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00290 Bpe-Chr9:2290169 Bpe10g00043 Bpe-Chr10:630645 0 dispersed
Bpe10g00049 Bpe-Chr10:687653 Bpe09g00290 Bpe-Chr9:2290169 2.71E-66 dispersed
Bpe09g00290 Bpe-Chr9:2290169 Bpe03g00474 Bpe-Chr3:24269260 1.27E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g956 . . . . Bpe09g00290 . . Bma13g00898 Cmo16g00505 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0984 . . . . . Blo10g00686 . . . . . . . . . Cma04g00636 Cma16g00466 Car04g00595 Car16g00421 . Cpe01g00574 . . . . . . . Cla07g01010 Cam07g1087 Cec07g1159 Cco07g1137 Clacu07g1061 Cmu07g1052 Cre07g1428 . . Chy07g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003005 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00290 Bpe_Chr09 FPKM 29.083456 34.795567 20.23156 20.348301 19.004513 18.238455 19.028934 10.742691 10.283318 10.332879