Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00300 ATGGCGAAGACTGGTGTGTTCGATTCTGATCCGGCGGTGATGGCGAAGACGGCGGAGTTGAAGAGGAAATTGCAGAGACTCGCTAGGGTTGTCGTAGACGATGATGATTACAGCACAGAATTAATCGATCAGGCTAAAGATACGCTCTTAGCGCTGAAGGAATTGAGGCTGAGTAAGCGATCTTTGTCTTTGAAGCATCTCGATTCTCCGAGTTTCCCTGAAGAGTATCGTTGCCCTCTTTCCAAAGAAATGATGAGAGATCCTGTGATCGTCTCTACCGGTCAGACCTATGACAGACCATTCATCCAAAAATGGCTGAAAGCAGGAAATAGAACATGCCCCAGGACTCAACAAGCGCTTTCACACACAATGCTTACTCCTAATCACTTAATTAGGGAGATGATATATCAATGGTGTAAAAGCAGAGGAATCGAAGTATCAGATTCTGTTCACTATCCCAATGACGAAGGCGTAACAGAAGCAGATCGAGGTCATTTTCTTGATTTGCTCAAGAAGACGTCATCCTCCTCAATTTCTGAGCAGAAGGAAGCAGCAAAAGAGCTACGATTGTTGACCAAGCGGATTCCTTCATTCCGGGCTCTTTTCAGCGAAACTCCAAACTCTATCCAGTCTTTACTCCTACCAATCTCTCATAGGGAGATGCAAAGTTGTATTGATTCTGATCTTCAGGAAGACGTAATCACAACCCTTTTGAATTTGTCAATCCATGACAACAACAAGAAGCTGGTTGCTGAAACTCCGACTGTAATTCCTCTTCTCATGGAAGCTCTAAGATCAGGAACGATAGAAACGAGGACCAATTCAGCTGCAACCCTTTTCACTTTATCAGCACTCGATTCAAACAAGGCCCTGATAGGGAAAGCAGGAGCATTAAAACCTCTCATAGATCTCTTGGAAGAGGGACATCCTTTAGCCATGAAAGACGTAGCTTCTGCAATCTTTAATCTCTGTATAATCCACGAGAACAAGGCAAGAGCAGTTCAAGATGGGGCTGTCAGAGTGATTTTGAGGAAACTGGTGAAAAATGTCCATGTTGATGAGTTGTTAGCCATTCTTGCAATGCTTTCGAGCAATCAGAAGGCCATTGAGGAAATGAGGGAGGTTGAAGCCGTTCTTTGCTTGCTCGGCATAATCCGAGACAATCCTTGTGCAAGAAACAAGGAGAACAGCATTGCAATTCTCCACACAATCTGTTTAAATGATCGATCGAGGTGGAAGGAAATGAGGGAAGCCGAGAAAACTTACGGTTTGATCTCCGATCTTGCTCAGAACGGAACGTCAAGAGCGAAAAGGAAGGCAAACGGCATACTTGAGAGACTGAACCGGGCTGTTAACATCACTCACACTGCCTAA 1374 44.54 MAKTGVFDSDPAVMAKTAELKRKLQRLARVVVDDDDYSTELIDQAKDTLLALKELRLSKRSLSLKHLDSPSFPEEYRCPLSKEMMRDPVIVSTGQTYDRPFIQKWLKAGNRTCPRTQQALSHTMLTPNHLIREMIYQWCKSRGIEVSDSVHYPNDEGVTEADRGHFLDLLKKTSSSSISEQKEAAKELRLLTKRIPSFRALFSETPNSIQSLLLPISHREMQSCIDSDLQEDVITTLLNLSIHDNNKKLVAETPTVIPLLMEALRSGTIETRTNSAATLFTLSALDSNKALIGKAGALKPLIDLLEEGHPLAMKDVASAIFNLCIIHENKARAVQDGAVRVILRKLVKNVHVDELLAILAMLSSNQKAIEEMREVEAVLCLLGIIRDNPCARNKENSIAILHTICLNDRSRWKEMREAEKTYGLISDLAQNGTSRAKRKANGILERLNRAVNITHTA 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2415815 2417715 + Bpe023969.1 Bpe09g00300 108700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00300 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 145 IPR013083 -
Bpe09g00300 457 SUPERFAMILY RING/U-box 68 147 - -
Bpe09g00300 457 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Bpe09g00300 457 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Bpe09g00300 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 455 - -
Bpe09g00300 457 SUPERFAMILY ARM repeat 168 447 IPR016024 -
Bpe09g00300 457 Pfam U-box domain 73 142 IPR003613 GO:0004842|GO:0016567
Bpe09g00300 457 PANTHER U BOX DOMAIN-CONTAINING 5 455 - -
Bpe09g00300 457 CDD RING-Ubox_PUB 76 118 IPR045210 -
Bpe09g00300 457 Pfam Armadillo/beta-catenin-like repeat 288 324 IPR000225 GO:0005515
Bpe09g00300 457 Gene3D - 146 452 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00300 Bpe-Chr9:2415815 Bpe10g00477 Bpe-Chr10:12036931 0 dispersed
Bpe09g00300 Bpe-Chr9:2415815 Bpe06g00548 Bpe-Chr6:16517917 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00300 - - mnt:21398908 672.544