Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00301 ATGGCGCCTACAGTGCTCGTCGCAGAAGAACAAGCGGAACAACTGAAAAGGGAAGGCAACATTTGCTTCAAGAAAGGTCGCGTTGGAGCTGCCATAGATGCCTATACCGAGGCAATTACGTTATGCCCTAGCGTTCCTGTGTATTGGACAAACAGAGCAGTATGCCATCGCAAGCGGAACGACTGGAAGAAGGCAGAGGAGGACAGTAGGAAGGCTATTGAGATTGACAGAAGTTATGCCAAGGCCCATTATTTGCTGGGATTATCATTATCAAAGAAAGAAGAATATCCTGAAGGAATCAAACATTTAGAGAAGGCGTTGGAACTCTTTAAAGGTGAGGACCAGAAGAATCTCATTGTAGAAGACATTTGGAAAGAACTTTCAAGAGCAAAGTACTTGGAATGGGAGCTCACCTCCACCGCCAGGTGGAGCGAATTACAAAGCTTGAAGGAGGCTTGTGAGACAGCTCTTGAGCAAATGCATTTTCTTGAAAATTCTGAGGCTGAAGAAGTCTTTGATGAAGCTTATTTTTCCCGTATCAAACAAATGGAGGCTTTAGATGCTGTATTTAGGAAACTTGCGGAGGCGGATGTGCCGACTGAGGTTCCGGATTATTTATGCTGTAAAATATCGCTCGATATTCTCTGGGATCCGGTCATTACTCCTAGTGGTATTACATACGAGAGAGCAGTGATTCTCAACCATATCCAAAAGGTGGGAAAGTTCGATCCGGTCACGCGGGAAACGCTTGACGAATCACAGCTTGTGGCAAACTTAGCTATTAAAGAAGCAGTGGAAGCCTTCCGAGACAAGCACAGATGGGCATATCAGACAGATTGA 840 45.12 MAPTVLVAEEQAEQLKREGNICFKKGRVGAAIDAYTEAITLCPSVPVYWTNRAVCHRKRNDWKKAEEDSRKAIEIDRSYAKAHYLLGLSLSKKEEYPEGIKHLEKALELFKGEDQKNLIVEDIWKELSRAKYLEWELTSTARWSELQSLKEACETALEQMHFLENSEAEEVFDEAYFSRIKQMEALDAVFRKLAEADVPTEVPDYLCCKISLDILWDPVITPSGITYERAVILNHIQKVGKFDPVTRETLDESQLVANLAIKEAVEAFRDKHRWAYQTD 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2419241 2424356 - Bpe023970.1 Bpe09g00301 108701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00301 279 Pfam U-box domain 202 274 IPR003613 GO:0004842|GO:0016567
Bpe09g00301 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 278 IPR013083 -
Bpe09g00301 279 CDD RING-Ubox_CHIP 202 268 IPR045202 -
Bpe09g00301 279 Coils Coil 146 166 - -
Bpe09g00301 279 ProSiteProfiles TPR repeat profile. 80 113 IPR019734 GO:0005515
Bpe09g00301 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 278 IPR045200 GO:0000209|GO:0061630
Bpe09g00301 279 ProSiteProfiles U-box domain profile. 201 275 IPR003613 GO:0004842|GO:0016567
Bpe09g00301 279 SMART tpr_5 80 113 IPR019734 GO:0005515
Bpe09g00301 279 SMART tpr_5 46 79 IPR019734 GO:0005515
Bpe09g00301 279 SMART tpr_5 12 45 IPR019734 GO:0005515
Bpe09g00301 279 Pfam Anaphase-promoting complex, cyclosome, subunit 3 47 106 - -
Bpe09g00301 279 SUPERFAMILY TPR-like 10 112 IPR011990 GO:0005515
Bpe09g00301 279 Gene3D Tetratricopeptide repeat domain 6 142 IPR011990 GO:0005515
Bpe09g00301 279 SUPERFAMILY RING/U-box 197 276 - -
Bpe09g00301 279 PANTHER OS08G0113300 PROTEIN 8 278 - -
Bpe09g00301 279 Pfam Tetratricopeptide repeat 19 44 IPR019734 GO:0005515
Bpe09g00301 279 SMART Ubox_2 205 268 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00301 Bpe-Chr9:2419241 Bpe06g00004 Bpe-Chr6:76505 1.02E-10 dispersed
Bpe03g00897 Bpe-Chr3:28739419 Bpe09g00301 Bpe-Chr9:2419241 1.66E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00301 K09561 - csv:101215457 379.407