Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00325 ATCGGACTTGTTCTGATGGCCTCGGGGGCTGGATCTCCTTGCGGAGCCTGCAAGTTTCTTAGGCGCAAGTGTGCAGCGGATTGCATCTTTGCGCCCTATTTTTGCTCAGAACAAGGCCCTGCTCGATTTGCTGCCATCCATAAAGTGTTTGGAGCTAGCAATGTGTCGAAGCTTTTGCTGCATGTCCCTGTTTCTGATCGATGCGAGGCTGTTGTTACTATTGCTTACGAAGCTCAAGCTAGAATTAGAGACCCTGTTTATGGCTGTGTTTCTCATATTTTTGCTCTGCAACAACAGGTGGCATGCTTGCAAGCACAACTAGTGCAAGCAAAGGCTCAGCTGGGTCAGAAAGTGATTGATTCTCACAGAATAGGGAATCAATGGACACTGAATAACGTTGTTAATGGAGTTTCAAGCTTTCCAAATTACCCTTCTCACATAAACTCTATATCCCCACAGAGCTCAGTTGAATCCTTAGATTACACCAACGAAGCAGTAAATCTGCAGGAAATCAAAAGCAGATCAGAAGAAGAATTTCGATACCAGACTTTCTACAAGAAAAGAGCTTATAATAGTGATGAACTTCAAGCATTGGCTTTCAGAATGATGAGGAGTTAG 618 44.01 IGLVLMASGAGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVSDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLVQAKAQLGQKVIDSHRIGNQWTLNNVVNGVSSFPNYPSHINSISPQSSVESLDYTNEAVNLQEIKSRSEEEFRYQTFYKKRAYNSDELQALAFRMMRS 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2947529 2948495 + Bpe023993.1 Bpe09g00325 108725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00325 205 Coils Coil 93 113 - -
Bpe09g00325 205 Pfam Lateral organ boundaries (LOB) domain 13 111 IPR004883 -
Bpe09g00325 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 7 204 - -
Bpe09g00325 205 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Bpe09g00325 205 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00325 Bpe-Chr9:2947529 Bpe10g00374 Bpe-Chr10:11320668 2.18E-58 dispersed
Bpe09g00325 Bpe-Chr9:2947529 Bpe09g00327 Bpe-Chr9:3009051 1.34E-53 proximal
Bpe04g01365 Bpe-Chr4:20273610 Bpe09g00325 Bpe-Chr9:2947529 1.67E-55 transposed
Bpe03g00906 Bpe-Chr3:28789928 Bpe09g00325 Bpe-Chr9:2947529 1.61E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21871 PF03195 LOB 9.80E-37 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00325 K13944 - qsu:111987550 262.692