Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00327 ATGACCGGCTCTGGTTCTCCTTGTGGAGCCTGCAAATTCCTGAGAAGAAAATGCGTGAGAGGGTGTGTTTTCGCACCTTATTTCTGCCATGAACAAGGAGCTTCACATTTTTCTGCCATTCACAGGGTTTTCGGAGCTAGCAACGTATCGAAGATGCTATCTCACCTTCCGGTTTCTGAACGTTTGGAAGCCGCCATGACAATCTCTTATGAAGCTCAAGCTAGGGTTGAAGACCCTATCTATGGCTGCGTTTCTCAAATCTTTGCGCTCCAGCAACAGGTTGTCAATTTGCAGGCTCAACTAGCTTTTCTCAGAGAACAAACAGCTCAAAGCAATTCCAACAGCTCTAATATGGAAAACACTTGTCTGAAATTCAATGCAAAATCTCATCACCTGCAATCCAAAGTTGATTACCACACGTGGTTTCAATCTGAAATCTTAAACACAATTCCACTACCCGATCCAAATCTGACAAACAACGTTAGCGATTCAAAGGCTATGGAATATTATGAGAATCCACTGATGCTCGGCGAAAACATCAGCTATCAAAGCTATGGAGAGGGTTCTCATTCGATGCAATTGAATTTCAAAGATGTAGAGGACCTTCGATCAATAGCTTTCACTCACGCGAAGTAA 636 43.08 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGASHFSAIHRVFGASNVSKMLSHLPVSERLEAAMTISYEAQARVEDPIYGCVSQIFALQQQVVNLQAQLAFLREQTAQSNSNSSNMENTCLKFNAKSHHLQSKVDYHTWFQSEILNTIPLPDPNLTNNVSDSKAMEYYENPLMLGENISYQSYGEGSHSMQLNFKDVEDLRSIAFTHAK 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3009051 3010010 - Bpe023996.1 Bpe09g00327 108727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00327 211 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Bpe09g00327 211 Coils Coil 87 107 - -
Bpe09g00327 211 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Bpe09g00327 211 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 156 - -
Bpe09g00327 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00431 Bpe-Chr6:15701204 Bpe09g00327 Bpe-Chr9:3009051 2.59E-69 dispersed
Bpe09g00327 Bpe-Chr9:3009051 Bpe10g00374 Bpe-Chr10:11320668 1.71E-71 dispersed
Bpe09g00325 Bpe-Chr9:2947529 Bpe09g00327 Bpe-Chr9:3009051 1.34E-53 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21872 PF03195 LOB 4.10E-36 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00327 K13945 - vvi:100266975 249.595