Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00408 ATTCGCAATAGCACGGAGAGGAGAAACTTGGGTTTCTTTTCCTGTGGAACCGGGAATCCGATTGACGACTGTTGGCGGTGTGACTCACGCTGGCAGATGCGCCGGAAGCACCTGGCCGACTGTGGCATTGGATTCGGACGCAATGCTATTGGTGGTCGAGATGGTCGATTCTATGTAGTCTCCGATTCTGGAGATGACGACCCTGTGAATCCAAGGCCTGGCACTCTTCGCCACGCTGTTATTCAGGATCAGCCTCTGTGGATAGTGTTCAAGCGTGATATGGTGATCACTTTGAAGCAAGAGCTCATTGTGAACAGCTTTAAGACGATTGATGGTCGTGGTGTAAACGTTCGTATTGCTTATGGGGCTTGCATTACGATTCAGTTCGTTACGAACGTCATTATCCACGGCCTCCACATTCACGATTGCAAGCCGACTGGCAATGCGATGGTGAGAAGCTCGCCTAGCCATTACGGGTGGAGGACGATGGCCGATGGGGATGCTATTTCCATCTTTGGGTCGAGTCATATTTGGATCGACCACAACTCTCTCTCCAATTGTGCCGATGGCCTAGTTGACGCTGTCATGGGTTCTACTGCCATTACCATTTCGAACAACTACTTCACTCACCACAACGAGGTAATATTACTGGGTCATAGTGACTCCTATACAAGGGACAAGCAAATGCAAGTGACAATTGCCTACAATCATTTTGGAGAGGGTCTCATCCAGAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTTGTAAACAACGACTACACACACTGGGAAATGTATGCCATTGGTGGTAGTGCTGATCCCACAATTAACAGCCAGGGGAATAGATACCTTGCACCCACAAACCCTTTTGCAAAAGAGGTTACAAAGAGGGTCGATACGAACACATATCAATGGAGACACTGGAATTGGAGATCAGAAGGAGACCTGTTGCTAAATGGAGCCTTCTTCATTCCATCAGGAACTGGGGTCGGAGCAAGTTATGCAAGAGCATCCAGTTTGGGAGCCAAGTCGTCCTCCTTGGTCGCCTCCATCACCTCCGGTGCAGGTGCTCTTTCTTGTCGCCGAGGCTACCAGTGT 1101 49.23 IRNSTERRNLGFFSCGTGNPIDDCWRCDSRWQMRRKHLADCGIGFGRNAIGGRDGRFYVVSDSGDDDPVNPRPGTLRHAVIQDQPLWIVFKRDMVITLKQELIVNSFKTIDGRGVNVRIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPTNPFAKEVTKRVDTNTYQWRHWNWRSEGDLLLNGAFFIPSGTGVGASYARASSLGAKSSSLVASITSGAGALSCRRGYQC 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6572920 6574273 + Bpe026224 Bpe09g00408 108808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00408 367 SUPERFAMILY Pectin lyase-like 4 362 IPR011050 -
Bpe09g00408 367 Pfam Pectate lyase 100 282 IPR002022 -
Bpe09g00408 367 PANTHER PECTATE LYASE 3 364 - -
Bpe09g00408 367 PANTHER PECTATE LYASE 18-RELATED 3 364 IPR045032 GO:0030570
Bpe09g00408 367 Gene3D - 18 360 IPR012334 -
Bpe09g00408 367 SMART amb_all 93 290 IPR002022 -
Bpe09g00408 367 PRINTS Pollen allergen Amb family signature 41 58 IPR018082 -
Bpe09g00408 367 PRINTS Pollen allergen Amb family signature 245 264 IPR018082 -
Bpe09g00408 367 PRINTS Pollen allergen Amb family signature 309 333 IPR018082 -
Bpe09g00408 367 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Bpe09g00408 367 PRINTS Pollen allergen Amb family signature 165 186 IPR018082 -
Bpe09g00408 367 PRINTS Pollen allergen Amb family signature 338 361 IPR018082 -
Bpe09g00408 367 PRINTS Pollen allergen Amb family signature 65 90 IPR018082 -
Bpe09g00408 367 PRINTS Pollen allergen Amb family signature 101 117 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00950 Bpe-Chr2:8589691 Bpe09g00408 Bpe-Chr9:6572920 1.97E-149 dispersed
Bpe04g01058 Bpe-Chr4:7873781 Bpe09g00408 Bpe-Chr9:6572920 0 dispersed
Bpe04g01900 Bpe-Chr4:23991902 Bpe09g00408 Bpe-Chr9:6572920 8.80E-176 dispersed
Bpe09g00408 Bpe-Chr9:6572920 Bpe14g01295 Bpe-Chr14:9892444 0 dispersed
Bpe09g00408 Bpe-Chr9:6572920 Bpe08g00306 Bpe-Chr8:1832348 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00408 K01728 - mnt:21398282 718.768