Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00436 ATGGGTAGACCCCAGCACCGTTATCGAGGAGTTCGCCAACGCCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTCTGAAGACGAGGATATGGCTTGGTACGTTTGAAACAGCTGAGGATGCAGCTAGAGCATATGATGAAGCAGCAAGGCTTATGTGTTGCCCGATGACCGGTACAAATTTCTCTCATAATCATCCACCTGATTCTATCTCTTCTCCCACGCTTCTATCTCCTGCTCTAATAAGCAAGCTTCAAAAATGTCACATTGCCTCCCTCCAAATGACCAAAAAGATTACCCCAAAGCATCCTCAAGAACTTGAACACATCCTGCGGTCTCCTTCGACTGTCACTGGAAAATTTCCAGCCATATTTTCCGGACAGGCAGAGATGGATGTAAGTTGGAAGGGGGAGTTGGGTCAGGGACAAAGTGGACAACCATTTGAATCTCTTGAAGATGACCAAGTAGAGCAGATGATTGAAGAGCTGCTTCATCTTGGGTCTATTGAACTTTGTGATCCTAACACCGTTACTTATTGA 543 46.41 MGRPQHRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCCPMTGTNFSHNHPPDSISSPTLLSPALISKLQKCHIASLQMTKKITPKHPQELEHILRSPSTVTGKFPAIFSGQAEMDVSWKGELGQGQSGQPFESLEDDQVEQMIEELLHLGSIELCDPNTVTY 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11173869 11174631 - Bpe024141.1 Bpe09g00436 108836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00436 180 Pfam AP2 domain 7 52 IPR001471 GO:0003700|GO:0006355
Bpe09g00436 180 PANTHER ETHYLENE RESPONSE FACTOR 1 174 - -
Bpe09g00436 180 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Bpe09g00436 180 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Bpe09g00436 180 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Bpe09g00436 180 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Bpe09g00436 180 CDD AP2 7 63 IPR001471 GO:0003700|GO:0006355
Bpe09g00436 180 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Bpe09g00436 180 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Bpe09g00436 180 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00436 Bpe-Chr9:11173869 Bpe13g01056 Bpe-Chr13:16205097 7.87E-29 dispersed
Bpe02g01256 Bpe-Chr2:16047004 Bpe09g00436 Bpe-Chr9:11173869 3.16E-50 wgd
Bpe06g00683 Bpe-Chr6:17434406 Bpe09g00436 Bpe-Chr9:11173869 4.55E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21881 PF00847 AP2 2.50E-11 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00436 - - csin:114287804 187.193