Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00529 ATGAGAAGGCTTAGTTATGGGTTATATTTTTGTCTCTTGCACTTATATAACATTTTGTGCAGGAGTATCAATGCATCGAGTTCTCGGAGGAGCCTTGCCGACTGGTCTTGTGCAACTGGAAACCCCATCGATGATTGTTGGAGGTGTGACCCCACTTGGGAGTCAAACCGGCAACGGTTAGCCGATTGTGCTATTGGGTTCGGAAAGAATGCCATGGGAGGAAAAAACGGTCGAATCTATGTAGTCACCGACTCGAATGATGACGATCCAGTGAATCCTAGGCCTGGAACTCTTCGATATGCCGTTATACAAGATGAACCATTATGGATAATTTTTAAAAGAGATATGGTGATTCAATTAAGACAAGAGCTGGTAATGAATTCTTTCAAGACCATTGATGGGAGAGGGGCAAGTGTTCATATTGCTGGAGGGCCATGCATAACCATACATTATGCTACAAACATCATCATACATGGAATTCACATACATGATTGCAAGCAAGGTGGGAATGGTAATATTCGAGACTCCCCACGACACTCCGGGTGGTGGACCGTATCGGATGGTGATGGAATTTCAATCTTTGGCGGGAGGCATGTGTGGGTGGACCATTGCTCTCTTTCAAATTGTCGTGATGGTCTGATCGATGCCATACATGGCTCGACTGCTATTACCATCTCGAACAACTATATGACTCATCATGACAAGGTTATGCTTTTAGGTCACAGCGATTATTTCGTACAAGATAAGAACATGCAAGTTACTATTGCCTTTAATCATTTTGGAGAAGGTCTTGTCCAAAGAATGCCCAGATGCAGGCTAGGATTCTTCCATGTGGTGAACAATGACTACACTCATTGGGAAATGTATGCAATTGGAGGGAGTGCAAATCCCACCATTTACAGCCAAGGGAATAGATTTTTAGCTCCTAATGTAAGATTCAGAAAAGAGGTGACTAAACATGAAGATGCTCCTCAAAGTGAATGGATGAATTGGAACTGGCGATCCGAAGGAGACTTGCTGTTGAACGGTGCATATTTCCGGCAGTCGGGAGCTGGCGCATCATCTAACTACGTCAGGGCACACAGCCTCGGTGCCAGACCAGCTTCTTATGTTGGCTCCATAACCGTGGCTGCCGGTGCACTTAGTTGCCGGAAGGGTTCTAGTTGCTAG 1170 45.04 MRRLSYGLYFCLLHLYNILCRSINASSSRRSLADWSCATGNPIDDCWRCDPTWESNRQRLADCAIGFGKNAMGGKNGRIYVVTDSNDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVIQLRQELVMNSFKTIDGRGASVHIAGGPCITIHYATNIIIHGIHIHDCKQGGNGNIRDSPRHSGWWTVSDGDGISIFGGRHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDYFVQDKNMQVTIAFNHFGEGLVQRMPRCRLGFFHVVNNDYTHWEMYAIGGSANPTIYSQGNRFLAPNVRFRKEVTKHEDAPQSEWMNWNWRSEGDLLLNGAYFRQSGAGASSNYVRAHSLGARPASYVGSITVAAGALSCRKGSSC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14060114 14061747 + Bpe024243.1 Bpe09g00529 108929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00529 389 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Bpe09g00529 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Bpe09g00529 389 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Bpe09g00529 389 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Bpe09g00529 389 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Bpe09g00529 389 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Bpe09g00529 389 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Bpe09g00529 389 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Bpe09g00529 389 SMART amb_all 115 312 IPR002022 -
Bpe09g00529 389 PANTHER PECTATE LYASE 18-RELATED 25 386 IPR045032 GO:0030570
Bpe09g00529 389 Pfam Pectate lyase 121 306 IPR002022 -
Bpe09g00529 389 Gene3D - 40 382 IPR012334 -
Bpe09g00529 389 SUPERFAMILY Pectin lyase-like 41 380 IPR011050 -
Bpe09g00529 389 PANTHER PECTATE LYASE 25 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00529 Bpe-Chr9:14060114 Bpe15g00661 Bpe-Chr15:17324303 0 dispersed
Bpe09g00529 Bpe-Chr9:14060114 Bpe08g00306 Bpe-Chr8:1832348 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00529 K01728 - jre:109009664 685.256