Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00535 ATGTACTTGTCGGAGAAGCCCCGTCCGATTGATTTCTATAAAGAGGGAGAACCGGAGAGAGACATGATGATCGAGGTGGTGACCAGTGATAGTTTACCGCCTCACCGCCACCACCACCTCCTCCACCACTCGCACCACCAGCAACATAACATGATTCTCGGCGATAGCAGTGGAGGCGAGGAGCCGGAAGTGAAAGCGCCGAAGAAACGAGCAGAGACTTGGGTTCAGGAAGAGACACGAAGTCTGATTAGCTTTCGACGGGAAGTAGACGGACTTTTCAACACTTCAAAGTCCAATAAGCACCTATGGGAGCAGATCTCGGCCAAAATGAGAGATAAGGGTTTTGATCGATCGCCGACAATGTGCACGGATAAGTGGAGGAACTTGCTCAAAGAGTTCAAGAAGGCGAGGCAGCAGGCTAAAGGTGGCAGTAAATCGGCCAAGATGTCGTATTACGAGCAGCTGGAGGAGCTGCTGAGAGATAGGACCAAAAATGCTGGAGCATATAAGAGCCCCACTCCTCATAAGATCGACTCATATATTCAATTTACTGATAAGGGTGAGAAATTCTTTAACATTCCCAAGTGCTATTTCGTTATGAAATTGCCTTCTAGTGATAGGTCGACTGTCAACTTGGAAAGGCAATTGGATTCTGATGGTGATCCTCTGGCAATTACCGCAGCTGATGCAGTTGGAGTCAATGGTGTACCTCCCTGGAACTGGAGGGAAACCCCTGGAAATGGGGATGGGCATTCGTCTTATTGTGGAAGGATTATATCAGTCAAGTTCGGAGACTATACTAGAAGAATCGGGATCGATGGAACATCCGATGCAATCAAGGAGGCCATTAAGTCTGCATTCAGGTTGAGGACTAAACGAGCATTTTGGTTGGAAGACGAAGACCGAGTTGTTCGGAGTCTCGACCGGGACATGCCTCTGGGAAATTACACTCTTCACCTTGATGAAGGAATCACATTAAAACTGTGTCTATATGATGAAAATGATCGAGTGGCCGTTCGGACAGAAGAGATTACACTGTACACGGAGGGTGACTTCCATGATTTTCTCATTCGACGTCGCTTCTCGGGTTTGAGAGAGCTTAGCAATTATAGATGCATTGACACTCTTGATGATCTTCATTCAGGTGAAATATATCAGGGGGTAAGACTTCTTGGTGACTAG 1182 47.04 MYLSEKPRPIDFYKEGEPERDMMIEVVTSDSLPPHRHHHLLHHSHHQQHNMILGDSSGGEEPEVKAPKKRAETWVQEETRSLISFRREVDGLFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKARQQAKGGSKSAKMSYYEQLEELLRDRTKNAGAYKSPTPHKIDSYIQFTDKGEKFFNIPKCYFVMKLPSSDRSTVNLERQLDSDGDPLAITAADAVGVNGVPPWNWRETPGNGDGHSSYCGRIISVKFGDYTRRIGIDGTSDAIKEAIKSAFRLRTKRAFWLEDEDRVVRSLDRDMPLGNYTLHLDEGITLKLCLYDENDRVAVRTEEITLYTEGDFHDFLIRRRFSGLRELSNYRCIDTLDDLHSGEIYQGVRLLGD 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14127580 14130546 + Bpe024249.1 Bpe09g00535 108935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00535 393 CDD GT1 72 137 - -
Bpe09g00535 393 PANTHER OJ000223_09.13 PROTEIN 5 390 - -
Bpe09g00535 393 SMART sant 70 132 IPR001005 -
Bpe09g00535 393 ProSiteProfiles Myb-like domain profile. 66 130 IPR001005 -
Bpe09g00535 393 Pfam Myb/SANT-like DNA-binding domain 73 158 IPR044822 -
Bpe09g00535 393 Gene3D - 74 136 - -
Bpe09g00535 393 PANTHER - 5 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00998 Bpe-Chr3:29523633 Bpe09g00535 Bpe-Chr9:14127580 8.00E-06 dispersed
Bpe09g00535 Bpe-Chr9:14127580 Bpe11g01534 Bpe-Chr11:11434580 0 dispersed
Bpe09g00535 Bpe-Chr9:14127580 Bpe04g00350 Bpe-Chr4:2226258 4.57E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21884 PF13837 Myb_DNA-bind_4 8.80E-20 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00535 - - vvi:100264546 555.444