Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00547 ATGCGTAGAAGGAAAAAGAAGAAGAAGAAGGAGAAGCTTCAGTTGGGAAAATCTATGGACTGGGAATGGAGAAAATTTGCTTGGGAGGAAACTGAAAATTTGACTGAAGAAAGAATCAGCGACACCCTTTTGGTTGGATCGGAGAAGAAGACCAAGAAAGTAGAAATTCAGGTGGGTAATGGCGGAAACAATTCAGAGGAGAAACTGAAGAAGAGAGTAAGTAGAACAAGGGTGGTTCCGTCGTCGAGATCGCTGAAAAGGGATCCCAATCTGACGTGCTTGGTCGACGGATGCAAGGCCGACCTGAGCAATTGCAAGGACTATCATCGCAGGCATAGGGTCTGTGAGCGCCACTCCAAGATTCCGGTCGTGCTCGTGAGAGGCGAAGAACAACGATTTTGCCAGCAGTGTAGCAGATTCCATTCTCTGGGTGAGTTTGATGAGGTGAAAAGAAGCTGCAGGGAACGCTTGGACGGGCATAATCGGCGCCGGAGAAAGCCTCAGCCGGAATCCATATACTTGACTCCCAAGGACTTCCTGTCCAATTTCAAAGGTCCCAGAATCTTGCAATTCAGCAGTTCACAGCGCAGTATGCCTGATTTGGATGCAAAGATTGCGTTGGCTCCTTATGCTTGGAAAACAGAAGCTGAAGCCATAGTCGATAACGGTCGAAAACGAATTCCTGTAATCGACTGGAAAACTCCTCCAAATCCTTCGGTTGCCCATGTACGCCATGTCGGAGATAAACAATTCTCATTGAAGCAGACAAACAATCAGAAAGATATCAACCAATCAACCCCTCAATTTTCTTCCTGCAACCCACTGCCCTTGGCCATCTCCTCGCCGGAAAGTGGAAGAGGCAGCCGTGGCGTTTCACAGCCAGTTAACTCCGGTCGTGCTCTCTATCTTCTGTCATCGTCACCATCACAAGCTTCAGGACTTGGTCTAAGCTGCTTCGATCTTCCACAAGAGTACTACTACGCCTACTCGAGGGAATCGACCGCCATTCCACAAGATACGTTGTTCCAAACGAGAGGCTCCGACGGCTCGTTCGAAGCTGAGCTGTCCCCGTCGCTCCTGACTTCTTGGGAGTAG 1095 49.04 MRRRKKKKKKEKLQLGKSMDWEWRKFAWEETENLTEERISDTLLVGSEKKTKKVEIQVGNGGNNSEEKLKKRVSRTRVVPSSRSLKRDPNLTCLVDGCKADLSNCKDYHRRHRVCERHSKIPVVLVRGEEQRFCQQCSRFHSLGEFDEVKRSCRERLDGHNRRRRKPQPESIYLTPKDFLSNFKGPRILQFSSSQRSMPDLDAKIALAPYAWKTEAEAIVDNGRKRIPVIDWKTPPNPSVAHVRHVGDKQFSLKQTNNQKDINQSTPQFSSCNPLPLAISSPESGRGSRGVSQPVNSGRALYLLSSSPSQASGLGLSCFDLPQEYYYAYSRESTAIPQDTLFQTRGSDGSFEAELSPSLLTSWE 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14250979 14252329 - Bpe024262.2 Bpe09g00547 108947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00547 364 Gene3D - 84 154 IPR036893 GO:0003677|GO:0005634
Bpe09g00547 364 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 55 316 IPR044817 GO:0003677
Bpe09g00547 364 Pfam SBP domain 93 166 IPR004333 GO:0003677
Bpe09g00547 364 ProSiteProfiles Zinc finger SBP-type profile. 90 167 IPR004333 GO:0003677
Bpe09g00547 364 SUPERFAMILY SBT domain 92 172 IPR036893 GO:0003677|GO:0005634
Bpe09g00547 364 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 55 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00547 - - - qsu:112033436 257.684
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe09g00547 Bpe11g01487 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00895 Bpe-Chr7:14987920 Bpe09g00547 Bpe-Chr9:14250979 2.86E-49 dispersed
Bpe09g00547 Bpe-Chr9:14250979 Bpe15g00225 Bpe-Chr15:13365051 1.45E-42 dispersed
Bpe11g01487 Bpe-Chr11:11061847 Bpe09g00547 Bpe-Chr9:14250979 7.91E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1148 . . . . . . . . Cmo14g00739 Cmo11g01608 Cma11g01513 Cma14g00725 Car11g01303 Car14g00662 . Cpe03g00630 . . . . . . . . . . . . . . . Cone11ag0042 Cone18ag1438 . . . . Chy06g01539 Cme06g01786 . . Bda07g01385 . Bpe09g00547 Bpe11g01487 . . . . . . . . . . . Bhi01g02096 . . . Hepe02g1698 . . Cla05g01423 Cam05g1511 Cec05g1523 Cco05g1559 Clacu05g1518 Cmu05g1426 Cre05g1528 . Csa03g02486 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00121 CCT 163 946 SBP-box Gene Family AT2G47070 60.4 1.3e-254 875.9
Bpe03g00509 CCT 163 987 SBP-box Gene Family AT2G47070 56.2 1.9e-245 845.5
Bpe11g00121 CCT 3 946 SBP-box Gene Family AT3G60030 56.0 1.5e-281 965.7
Bpe03g00509 CCT 2 987 SBP-box Gene Family AT3G60030 53.1 1.0e-272 936.4
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50570 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50570 63.6 2.1e-37 153.3
Bpe11g00121 CCT 163 946 SBP-box Gene Family AT2G47070 60.4 1.3e-254 875.9
Bpe03g00509 CCT 163 987 SBP-box Gene Family AT2G47070 56.2 1.9e-245 845.5
Bpe11g00121 CCT 3 946 SBP-box Gene Family AT3G60030 56.0 1.5e-281 965.7
Bpe03g00509 CCT 2 987 SBP-box Gene Family AT3G60030 53.1 1.0e-272 936.4
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50570 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50570 63.6 2.1e-37 153.3
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50670 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50670 63.6 2.1e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006434 2 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 3 1 1 2 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21885 PF03110 SBP 6.60E-31 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00547 Bpe_Chr09 FPKM 26.919094 22.284273 4.69417 5.597373 3.172152 0.732212 2.28537 20.516361 23.080248 23.126837