Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe09g00550 | ATGGATCCCAAAGGCTCAAAGCAGCCGCAGGAAGTGGTTCCCAATTTTTTGCAAGCTCGCCCCCAATCTCAGCTAGAATCAAATATGGCTGAAAATAAATCTTCCGAAATTAAGGATTTTCAGAGTGTAGTAGCAGATAAAGAAGAGGGGAAGAAGCAATTAGCTCCAAAACGAAGCTCGAATAAAGATAGGCACACCAAGGTAGATGGTAGAGGTAGAAGGATAAGGATGCCAGCTCTGTGCGCAGCGAGGATTTTTCAACTGACAAGAGAATTAGGGCATAAATCAGATGGGGAAACCATCCAGTGGCTTTTGCAACAGGCGGAGCCGTCGATAATTGCGGCTACCGGGACCGGAACTATCCCGGCTTCTGCTTTAGCGGCGGCCGGAGTATCTGTATCTCAGCAAGGGACCTCTTTATCAACTGGATTGCACCAAAAGATTGAGGATGATTTCGGAGGGTCAGGAAGTAGGACCAGTTGGGCTATGGTGGGTGGCAATTTGGGGAGACCGCCACCCCATATGGCTTCAGGGCTATGGCCTCCAGTCGGTAGCTTTGGGTTTCAGTCATCGTCTTCTCCGACAACAAATATGACACCCGAGAGTGCAAATTACCTCCAGAAGATCGGGTTCCCTGGATTTGACTTGCCAGTCGGGAATATCGGTCCGATGAGTTTCACCTCGATTCTGAGCAGCAATAGCCAGCAGCTGCCGGAGCTGGGGCTAGGGTTGTCGCCGGAAGGTCACATCGGAGTTTTGAATCCACATGCTTTCACTCAGATTTATCAGCAGATGCGGCAAGCTAGAGTTCATCCGCAACATCACCAAGCTTCTCCTAAGGATGATTCTCAAGGTTCAGGCTCAGCCAACTAG | 873 | 49.71 | MDPKGSKQPQEVVPNFLQARPQSQLESNMAENKSSEIKDFQSVVADKEEGKKQLAPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGVSVSQQGTSLSTGLHQKIEDDFGGSGSRTSWAMVGGNLGRPPPHMASGLWPPVGSFGFQSSSSPTTNMTPESANYLQKIGFPGFDLPVGNIGPMSFTSILSSNSQQLPELGLGLSPEGHIGVLNPHAFTQIYQQMRQARVHPQHHQASPKDDSQGSGSAN | 290 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 14289329 | 14290201 | + | Bpe024266.1 | Bpe09g00550 | 108950 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe09g00550 | 290 | MobiDBLite | consensus disorder prediction | 266 | 290 | - | - | |
| Bpe09g00550 | 290 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 29 | 286 | IPR005333 | GO:0003700 | |
| Bpe09g00550 | 290 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
| Bpe09g00550 | 290 | MobiDBLite | consensus disorder prediction | 40 | 70 | - | - | |
| Bpe09g00550 | 290 | Pfam | TCP family transcription factor | 60 | 147 | IPR017887 | - | |
| Bpe09g00550 | 290 | PANTHER | TRANSCRIPTION FACTOR TCP20-LIKE | 29 | 286 | - | - | |
| Bpe09g00550 | 290 | ProSiteProfiles | TCP domain profile. | 61 | 115 | IPR017887 | - | |
| Bpe09g00550 | 290 | MobiDBLite | consensus disorder prediction | 11 | 39 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe04g00690 | Bpe-Chr4:4420563 | Bpe09g00550 | Bpe-Chr9:14289329 | 1.53E-34 | dispersed | |
| Bpe08g00165 | Bpe-Chr8:914169 | Bpe09g00550 | Bpe-Chr9:14289329 | 7.52E-29 | dispersed | |
| Bpe09g00550 | Bpe-Chr9:14289329 | Bpe12g00551 | Bpe-Chr12:11348752 | 1.17E-39 | dispersed | |
| Bpe14g01350 | Bpe-Chr14:10779890 | Bpe09g00550 | Bpe-Chr9:14289329 | 1.84E-119 | transposed | |
| Bpe11g01485 | Bpe-Chr11:11046775 | Bpe09g00550 | Bpe-Chr9:14289329 | 7.07E-154 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 21886 | PF03634 | TCP | 1.80E-31 | No_clan | Bpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe09g00550 | - | - | jre:108987051 | 419.083 |