Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00550 ATGGATCCCAAAGGCTCAAAGCAGCCGCAGGAAGTGGTTCCCAATTTTTTGCAAGCTCGCCCCCAATCTCAGCTAGAATCAAATATGGCTGAAAATAAATCTTCCGAAATTAAGGATTTTCAGAGTGTAGTAGCAGATAAAGAAGAGGGGAAGAAGCAATTAGCTCCAAAACGAAGCTCGAATAAAGATAGGCACACCAAGGTAGATGGTAGAGGTAGAAGGATAAGGATGCCAGCTCTGTGCGCAGCGAGGATTTTTCAACTGACAAGAGAATTAGGGCATAAATCAGATGGGGAAACCATCCAGTGGCTTTTGCAACAGGCGGAGCCGTCGATAATTGCGGCTACCGGGACCGGAACTATCCCGGCTTCTGCTTTAGCGGCGGCCGGAGTATCTGTATCTCAGCAAGGGACCTCTTTATCAACTGGATTGCACCAAAAGATTGAGGATGATTTCGGAGGGTCAGGAAGTAGGACCAGTTGGGCTATGGTGGGTGGCAATTTGGGGAGACCGCCACCCCATATGGCTTCAGGGCTATGGCCTCCAGTCGGTAGCTTTGGGTTTCAGTCATCGTCTTCTCCGACAACAAATATGACACCCGAGAGTGCAAATTACCTCCAGAAGATCGGGTTCCCTGGATTTGACTTGCCAGTCGGGAATATCGGTCCGATGAGTTTCACCTCGATTCTGAGCAGCAATAGCCAGCAGCTGCCGGAGCTGGGGCTAGGGTTGTCGCCGGAAGGTCACATCGGAGTTTTGAATCCACATGCTTTCACTCAGATTTATCAGCAGATGCGGCAAGCTAGAGTTCATCCGCAACATCACCAAGCTTCTCCTAAGGATGATTCTCAAGGTTCAGGCTCAGCCAACTAG 873 49.71 MDPKGSKQPQEVVPNFLQARPQSQLESNMAENKSSEIKDFQSVVADKEEGKKQLAPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGVSVSQQGTSLSTGLHQKIEDDFGGSGSRTSWAMVGGNLGRPPPHMASGLWPPVGSFGFQSSSSPTTNMTPESANYLQKIGFPGFDLPVGNIGPMSFTSILSSNSQQLPELGLGLSPEGHIGVLNPHAFTQIYQQMRQARVHPQHHQASPKDDSQGSGSAN 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14289329 14290201 + Bpe024266.1 Bpe09g00550 108950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00550 290 MobiDBLite consensus disorder prediction 266 290 - -
Bpe09g00550 290 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 286 IPR005333 GO:0003700
Bpe09g00550 290 MobiDBLite consensus disorder prediction 1 70 - -
Bpe09g00550 290 MobiDBLite consensus disorder prediction 40 70 - -
Bpe09g00550 290 Pfam TCP family transcription factor 60 147 IPR017887 -
Bpe09g00550 290 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 29 286 - -
Bpe09g00550 290 ProSiteProfiles TCP domain profile. 61 115 IPR017887 -
Bpe09g00550 290 MobiDBLite consensus disorder prediction 11 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00550 - - - jre:108987051 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00690 Bpe-Chr4:4420563 Bpe09g00550 Bpe-Chr9:14289329 1.53E-34 dispersed
Bpe08g00165 Bpe-Chr8:914169 Bpe09g00550 Bpe-Chr9:14289329 7.52E-29 dispersed
Bpe09g00550 Bpe-Chr9:14289329 Bpe12g00551 Bpe-Chr12:11348752 1.17E-39 dispersed
Bpe14g01350 Bpe-Chr14:10779890 Bpe09g00550 Bpe-Chr9:14289329 1.84E-119 transposed
Bpe11g01485 Bpe-Chr11:11046775 Bpe09g00550 Bpe-Chr9:14289329 7.07E-154 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00011 . 35 261 TCP Transcription Factor Family AT5G23280 54.0 2.3e-54 209.1
Bpe15g00954 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.6e-52 203.0
Bpe08g01471 BCT 92 370 TCP Transcription Factor Family AT2G45680 50.3 1.5e-54 210.3
Bpe15g00605 BCT,CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 82.7 3.3e-41 166.4
Bpe09g00550 . 1 287 TCP Transcription Factor Family AT3G27010 53.1 7.3e-66 247.7
Bpe11g01485 . 6 257 TCP Transcription Factor Family AT3G27010 55.4 5.0e-59 224.9
Bpe15g00954 . 1 259 TCP Transcription Factor Family AT5G08330 51.6 5.9e-60 227.6
Bpe12g00011 . 1 259 TCP Transcription Factor Family AT5G08330 51.8 1.5e-58 223.0
Bpe12g00521 CCT 27 126 TCP Transcription Factor Family AT5G60970 77.2 1.9e-38 156.8
Bpe14g00144 . 29 154 TCP Transcription Factor Family AT3G02150 65.4 9.5e-38 154.5
Bpe15g00176 BCT,CCT,ECH 8 191 TCP Transcription Factor Family AT2G31070 53.8 6.4e-42 168.3
Bpe12g00269 . 14 198 TCP Transcription Factor Family AT2G31070 53.5 2.7e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21886 PF03634 TCP 1.80E-31 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00550 Bpe_Chr09 FPKM 2.235905 3.171583 4.875969 4.786142 4.535866 4.819172 7.228831 6.227461 5.743762 7.046991