Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00603 ATGGCGGTGATAGTCGTGGTACTCGTTGCCGCGCTTTTCTTCATGGCTTTCTTCTCCGTCTACATCCGGCAATGCTCCAATCCGCAATCCGCCGGCGGAAGCATCAGAAACCTTGCGGGAGCAGTCACCGGGAGATCGAGACGCGCCGCTCGCGGCCTCGATGCGAGTGTGATCAGCACGTTTCCGACTTTCGCCTACTCTGAGGTGAAGGAGCTGAAGAAGGGGAATGGGGCGCTAGAATGCGCCGTGTGTTTAAACGAGTTCGAAGAGGACGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTCTTCCACCCTGACTGCATCGACGCCTGGTTAGGGAACCACACCACCTGTCCGGTTTGCCGAGCCAACCTGGTCCCTCAACCCGACGATCCGGCTGGTCAACCCACTGAGTCCACCGCCGAGTTAGATATTGAGTCCCAAACCCAGGCCGTCGAAGAACAACAGCCAACTTCGTCTTCTCAAGCGAGTGCGCCTGAACCTCCGGCGACGAAAGTTTTGAATAGAAACCGTACGCGTGGTTCCAGGTCGAGCGGATTACGGTGGTTCTATTCTCGTTCTCATTCGACGGGCCATTCTCTAGTCCAACCAGGCGAAAATACGGAGAGGTACACGCTGAGATTGCCGGTGGAGATAAGAAAGCAAATAATGAACCGGGAATTGAACCGGACGTCAAGCCTGGTGTTGTTGCCGAGTGAAATCAGTTCACGGCCAGGGTACAGATTGAGTGGCGGTGAAGGGAGCGGTCGAGGGAAGTCCTCCCGTCGGCTCGATCGGACGGCAACAGCGAAGTCCGATAGGTGGGTGTTTTCGATGACTCCACCGTTTTTTACGAGGATGTCATCGATGAAAACGGCAAAGGTGGTGACAGATGATGGCGAGGGGACGTCGACGCAAGAAGCAAAAGTTGGAGTGTAG 942 55.73 MAVIVVVLVAALFFMAFFSVYIRQCSNPQSAGGSIRNLAGAVTGRSRRAARGLDASVISTFPTFAYSEVKELKKGNGALECAVCLNEFEEDETLRLIPKCDHVFHPDCIDAWLGNHTTCPVCRANLVPQPDDPAGQPTESTAELDIESQTQAVEEQQPTSSSQASAPEPPATKVLNRNRTRGSRSSGLRWFYSRSHSTGHSLVQPGENTERYTLRLPVEIRKQIMNRELNRTSSLVLLPSEISSRPGYRLSGGEGSGRGKSSRRLDRTATAKSDRWVFSMTPPFFTRMSSMKTAKVVTDDGEGTSTQEAKVGV 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14749463 14750404 - Bpe024319.1 Bpe09g00603 109003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00603 313 MobiDBLite consensus disorder prediction 245 271 - -
Bpe09g00603 313 MobiDBLite consensus disorder prediction 148 169 - -
Bpe09g00603 313 CDD RING-H2_EL5_like 80 123 - -
Bpe09g00603 313 SMART ring_2 81 122 IPR001841 -
Bpe09g00603 313 MobiDBLite consensus disorder prediction 148 190 - -
Bpe09g00603 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 128 IPR013083 -
Bpe09g00603 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 1 243 - -
Bpe09g00603 313 Pfam Ring finger domain 80 123 IPR001841 -
Bpe09g00603 313 SUPERFAMILY RING/U-box 58 131 - -
Bpe09g00603 313 MobiDBLite consensus disorder prediction 176 190 - -
Bpe09g00603 313 ProSiteProfiles Zinc finger RING-type profile. 81 123 IPR001841 -
Bpe09g00603 313 PANTHER RING FINGER DOMAIN-CONTAINING 1 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00603 K10664 ATL6S; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27] - tcc:18600420 346.665
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01132 Bpe-Chr2:14920718 Bpe09g00603 Bpe-Chr9:14749463 5.27E-58 dispersed
Bpe04g00798 Bpe-Chr4:5240047 Bpe09g00603 Bpe-Chr9:14749463 1.22E-26 dispersed
Bpe08g00828 Bpe-Chr8:10381458 Bpe09g00603 Bpe-Chr9:14749463 1.38E-34 dispersed
Bpe09g00603 Bpe-Chr9:14749463 Bpe14g00468 Bpe-Chr14:4197633 1.03E-67 dispersed
Bpe15g01388 Bpe-Chr15:21805636 Bpe09g00603 Bpe-Chr9:14749463 9.86E-16 dispersed
Bpe11g01365 Bpe-Chr11:10219330 Bpe09g00603 Bpe-Chr9:14749463 1.53E-160 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe09g00603 . 1 287 Rapid Response to Elicitors AT3G05200 52.6 1.9e-66 250.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007000 1 1 2 3 2 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00603 Bpe_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0