Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00603 ATGGCGGTGATAGTCGTGGTACTCGTTGCCGCGCTTTTCTTCATGGCTTTCTTCTCCGTCTACATCCGGCAATGCTCCAATCCGCAATCCGCCGGCGGAAGCATCAGAAACCTTGCGGGAGCAGTCACCGGGAGATCGAGACGCGCCGCTCGCGGCCTCGATGCGAGTGTGATCAGCACGTTTCCGACTTTCGCCTACTCTGAGGTGAAGGAGCTGAAGAAGGGGAATGGGGCGCTAGAATGCGCCGTGTGTTTAAACGAGTTCGAAGAGGACGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTCTTCCACCCTGACTGCATCGACGCCTGGTTAGGGAACCACACCACCTGTCCGGTTTGCCGAGCCAACCTGGTCCCTCAACCCGACGATCCGGCTGGTCAACCCACTGAGTCCACCGCCGAGTTAGATATTGAGTCCCAAACCCAGGCCGTCGAAGAACAACAGCCAACTTCGTCTTCTCAAGCGAGTGCGCCTGAACCTCCGGCGACGAAAGTTTTGAATAGAAACCGTACGCGTGGTTCCAGGTCGAGCGGATTACGGTGGTTCTATTCTCGTTCTCATTCGACGGGCCATTCTCTAGTCCAACCAGGCGAAAATACGGAGAGGTACACGCTGAGATTGCCGGTGGAGATAAGAAAGCAAATAATGAACCGGGAATTGAACCGGACGTCAAGCCTGGTGTTGTTGCCGAGTGAAATCAGTTCACGGCCAGGGTACAGATTGAGTGGCGGTGAAGGGAGCGGTCGAGGGAAGTCCTCCCGTCGGCTCGATCGGACGGCAACAGCGAAGTCCGATAGGTGGGTGTTTTCGATGACTCCACCGTTTTTTACGAGGATGTCATCGATGAAAACGGCAAAGGTGGTGACAGATGATGGCGAGGGGACGTCGACGCAAGAAGCAAAAGTTGGAGTGTAG 942 55.73 MAVIVVVLVAALFFMAFFSVYIRQCSNPQSAGGSIRNLAGAVTGRSRRAARGLDASVISTFPTFAYSEVKELKKGNGALECAVCLNEFEEDETLRLIPKCDHVFHPDCIDAWLGNHTTCPVCRANLVPQPDDPAGQPTESTAELDIESQTQAVEEQQPTSSSQASAPEPPATKVLNRNRTRGSRSSGLRWFYSRSHSTGHSLVQPGENTERYTLRLPVEIRKQIMNRELNRTSSLVLLPSEISSRPGYRLSGGEGSGRGKSSRRLDRTATAKSDRWVFSMTPPFFTRMSSMKTAKVVTDDGEGTSTQEAKVGV 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14749463 14750404 - Bpe024319.1 Bpe09g00603 109003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00603 313 MobiDBLite consensus disorder prediction 245 271 - -
Bpe09g00603 313 MobiDBLite consensus disorder prediction 148 169 - -
Bpe09g00603 313 CDD RING-H2_EL5_like 80 123 - -
Bpe09g00603 313 SMART ring_2 81 122 IPR001841 -
Bpe09g00603 313 MobiDBLite consensus disorder prediction 148 190 - -
Bpe09g00603 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 128 IPR013083 -
Bpe09g00603 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 1 243 - -
Bpe09g00603 313 Pfam Ring finger domain 80 123 IPR001841 -
Bpe09g00603 313 SUPERFAMILY RING/U-box 58 131 - -
Bpe09g00603 313 MobiDBLite consensus disorder prediction 176 190 - -
Bpe09g00603 313 ProSiteProfiles Zinc finger RING-type profile. 81 123 IPR001841 -
Bpe09g00603 313 PANTHER RING FINGER DOMAIN-CONTAINING 1 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01132 Bpe-Chr2:14920718 Bpe09g00603 Bpe-Chr9:14749463 5.27E-58 dispersed
Bpe04g00798 Bpe-Chr4:5240047 Bpe09g00603 Bpe-Chr9:14749463 1.22E-26 dispersed
Bpe08g00828 Bpe-Chr8:10381458 Bpe09g00603 Bpe-Chr9:14749463 1.38E-34 dispersed
Bpe09g00603 Bpe-Chr9:14749463 Bpe14g00468 Bpe-Chr14:4197633 1.03E-67 dispersed
Bpe15g01388 Bpe-Chr15:21805636 Bpe09g00603 Bpe-Chr9:14749463 9.86E-16 dispersed
Bpe11g01365 Bpe-Chr11:10219330 Bpe09g00603 Bpe-Chr9:14749463 1.53E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00603 K10664 - tcc:18600420 346.665