Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00662 ATGGGGACAAAACTTGTGCAAATTTGTGTCAAAGAAGAGAATGATGACTTTCCATCAGTTCCACCGGGCTTTGAGGCGTTGACATCTTTTGCCGTCCAGAAGATAGAAGATAATTTTCAACGAGGAAGTGACAATTTGATTAGTTGCATGCCTTCCACTAGTATTTCGGAAACACAATCTGCTCCGGACAGCACTCTTGATACTAAGATAACAAGATCCCTACGACCAAGACCATGTATTAACTATGGTCTATACGACAGCTACTGTGATGGTGTATTTGATTCTGAGATGGTTGAACAAAATTTATCTTTGAAGCCTCCTCTTCCCAAGGGGGTAATTCGGGGTTGTGCAGAGTGTAGTACTTGCCAAAAGGTGACTGCAAGATGGCATCCCAAAGAGTCTTGCAGACCCAATATTGAGGACGCTCCCATTTTTTATCCAACTGAAGAGGACTTTGACGATACCTTGAGATATATATCTAGTATACGTGCAAAAGCTGAACCCTATGGGATCTGTCGCATTGTTCCTCCCTCTTCTTGGAAACCTCCCTGTCCTCTACAGGAACTAGTGAAATGGACGAGTTCCAAATTTGCTACTCGTGTCCAGAGGATTGACAAACTTCAGAATCGAGATTCATTGAGAAAGATGTCAAGGACTCATGGCCAAATGAAGAGAAAAAGAAGAAGAAATGCACGCATGGGGGTAGATTGTGCTATGGGTAATGGAGGACTAGGAGACACGGAAAGCTTTGGATTTGAACCTGGTTTAGAGTTTACTTTGGAAACATTTAAAAAATATGCAGATGACTTCAAAATGCAGTATTTTAGTAGCACCGACGTTGATTCTTTAATTGGAATTCAATTGAAAGAGAATCATGAGCCATCGTTGGAGAATATTGAGGGGGAATATTGGAGGATGGTAGAGAAACCTACTGAGGAAATTGAGGTGTTATACGGGGCAGATATTGAAACCGGAGTTTTTGGTAGCGGTTTTCCTAAAATTTCTGGCCAAGTTGATTCAACTTCAGATGAAAAATATGTAACATCAGGTTGGAATTTGAACAATTTTCCAAGGCTTCCTGGATCTGTTCTTTCCTATGAAAGCAGTGATATTTCAGGTGTTTTGGTGCCGTGGCTGTATGTTGGGATGTGCTTTTCATCCTTTTGCTGGCATGTTGAAGATCATCACCTATATTCATTGAATTACATGCATTGGGGTGATCCAAAAATTTGGTATGGCGTCCCAGGGAAGGATGCCTGCAAATTAGAGGATGCTATGAGAAAGCATTTGCCTGATCTTTTTGAGGAACAACCTGATTTACTTCATAAGCTGGTCACACAACTTTCCCCTTCCATATTAAAGTCTGAGGGAGTTCCTGTATATAGGTGCACTCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGAGCATATCATTCAGGATTCAATTGTGGTTTCAACTGTGCTGAGGCAGTTAATGTTGCACCAGTTGATTGGTTACCACATGGTCAAATTGCCATAGAATTATACCGTAAGCAAGGAAGAAGAACTTCTATTTCCCATGATAAGTTATTGCTTGGAGCTGCTAGAGAAGCTGTAAAAGCACATTGGGAGCTTAATTTACTGAAGAAGAATACTTCAGATAATTTAAGGTGGAAAGATGTCTGCGGAAAAGATGGGGTTTTAGCAAAATCTCTCAAGATGCGGATTGAAATGGAGTGTATCCGACGCAATACTATATGCAGTTCTTCACAGGCAGTGAAGATGGAGAGCAGCTTTGATGCCACTAACGAGAAGGAATGCAGTTTATGCTTTTTTGACTTGCACCTCTCTGCGGTTAGTTGCTGTTGTTCCCCAGATAAATACGCATGCTTGAATCACGTGAAGCAGTTTTGCTCCTGTGCTCAGGCTGCTAGAATTTTCCTATTCCGATATGAGATTAGTGAATTGAATATCCTTGTCGAGGCTTTGGAAGGGAAATTAAGTGCAATTTATAGATGGGCTAAACTGGATCTTGGATTGGCTCTAAGTTCTCACATCTCGAAAGACAAGATGCATAATAGTAGATTAATCAAATCATCTGAAGGAGCAGAACTTAAAGATTTGGCATTACAACAATCAAGTGGTTATCTTAAAGATTTACATTGGAGGGAATCATTTACAGAGGTTCCAAAAACTTCCAGTGGAATTACTGGAGATATCTCTTCTCAACACAACAACGAATTAGCAGAAGCTATATCAACATTGAAGATCAAAGAATTACTGTCGAAATCTAATGGTTTGTTAAAGGAAATTGAAAAGACGAATCATGACTTTAAATTGAGGAAAGAAGAACACAATGGTACTGTTTTCAATTTGACATCTGCAAGTGGCCAGTTGTCTCCGAAAGACGTAAAACATTGTGTAAATCCAGTTTCCAGAAAAGGAAGAGATGATAAGGCTTCACTTTTTAAACCCAAGAATGTAATACTCCTAAGTGACGATGAAGGTGATAATGAGCCTAAAGGGTCAGTTTTGGAAGAAAAAGAAAGTTCTTTAGCAAGGCGATTAGAAGACTCCGACAGGTTGGCTGGAGCTGATACTAAGGCAATCCTTTGTTATCATGATAAAGATACAAACTTGATCACCCCATTGACTGATGCAGCAGTAATGGATGAGAAGGATGTCGTTTATCAGCCTCAGAAGAAACTGAAAACTTGTTCAGCTAATGTTGTGCCAGTAAAAATCGACCACCCTGAAAAAAATAGGTCAATGTCAGGAAATGCTAGTCCAGAGAATGCCATTTGTAACCTAGATTCTCCGGAGGAAGTTATAAATGGTCGAGTTCTTTCAACCCAAATATGTAGTTCTGGAAAGATTGATAACGAGGATAGGGTTTGTCTTTCAAACTTTGTGGGCAATGAAAGAAGTACACACGGAAATCTTTCTTGTTCCAAAAATCATTTAAACAGGTACTTCCGGCAAAAGGGTCCTAGAATAGCAAAGGTCGTAAGAAGGATCAACTGTAACGTAGAGCCTTTAGAATTTGGAGTAGTGGTTTCTGGAAAGTGTTGGTCTAACAGTCTGAGCATTTTTCCTAAAGGATTTAAGAGCCGAGTCAGGTTCATAAGCGTCTTGGATCCATCCAACATGGCCTACTATGTTTCAGAGATTCTTGATGCTGGAGTAGATAGACCTCTATTCATGGTTTCGCTGGAACAATGCCCAGATGAGGTGTTTATACATGTTTCACCAGCCCGTTGTTGGGAATTAGTGAGAGAGAGAGTGAATCAAGAGATCTCTAAGCATCATTTGTTAGGAAGAATGGATCTTCCTCCATTGCAGCCTCCTAAGAGTTTAGATGGTTTTGAAATGTTTGGATTCACTGCACCAGCTATTGTGCAGGCCATCGAAGCAATGGATCGAAATCGAGTCAGCACCGAGTATTGGGACTCACGACCATATTCTCGGCCTCAAATACAAATGGTACCTCCTTCGCAATCAATAACCATCAATAAAAATCCACAAAGAGTGTCAGAAAATAGAACCAATAATGGGTATTTGGCGGGAACCGATTTGATACTCCAGGGGTTATTCAAGAAGGCAAATCCAGAAGAATTGCACTCATTGTATCGCATCTTAAGTGACAAGAAGCAAAAATCTGATCAAGGGGTGGTGATAAAACTTCTCAGCGAAGAGATTCATCATCGCCCGCAATGA 3699 40.44 MGTKLVQICVKEENDDFPSVPPGFEALTSFAVQKIEDNFQRGSDNLISCMPSTSISETQSAPDSTLDTKITRSLRPRPCINYGLYDSYCDGVFDSEMVEQNLSLKPPLPKGVIRGCAECSTCQKVTARWHPKESCRPNIEDAPIFYPTEEDFDDTLRYISSIRAKAEPYGICRIVPPSSWKPPCPLQELVKWTSSKFATRVQRIDKLQNRDSLRKMSRTHGQMKRKRRRNARMGVDCAMGNGGLGDTESFGFEPGLEFTLETFKKYADDFKMQYFSSTDVDSLIGIQLKENHEPSLENIEGEYWRMVEKPTEEIEVLYGADIETGVFGSGFPKISGQVDSTSDEKYVTSGWNLNNFPRLPGSVLSYESSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPGKDACKLEDAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCTQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYRKQGRRTSISHDKLLLGAAREAVKAHWELNLLKKNTSDNLRWKDVCGKDGVLAKSLKMRIEMECIRRNTICSSSQAVKMESSFDATNEKECSLCFFDLHLSAVSCCCSPDKYACLNHVKQFCSCAQAARIFLFRYEISELNILVEALEGKLSAIYRWAKLDLGLALSSHISKDKMHNSRLIKSSEGAELKDLALQQSSGYLKDLHWRESFTEVPKTSSGITGDISSQHNNELAEAISTLKIKELLSKSNGLLKEIEKTNHDFKLRKEEHNGTVFNLTSASGQLSPKDVKHCVNPVSRKGRDDKASLFKPKNVILLSDDEGDNEPKGSVLEEKESSLARRLEDSDRLAGADTKAILCYHDKDTNLITPLTDAAVMDEKDVVYQPQKKLKTCSANVVPVKIDHPEKNRSMSGNASPENAICNLDSPEEVINGRVLSTQICSSGKIDNEDRVCLSNFVGNERSTHGNLSCSKNHLNRYFRQKGPRIAKVVRRINCNVEPLEFGVVVSGKCWSNSLSIFPKGFKSRVRFISVLDPSNMAYYVSEILDAGVDRPLFMVSLEQCPDEVFIHVSPARCWELVRERVNQEISKHHLLGRMDLPPLQPPKSLDGFEMFGFTAPAIVQAIEAMDRNRVSTEYWDSRPYSRPQIQMVPPSQSITINKNPQRVSENRTNNGYLAGTDLILQGLFKKANPEELHSLYRILSDKKQKSDQGVVIKLLSEEIHHRPQ 1232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15252648 15263488 + Bpe024377.2 Bpe09g00662 109062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00662 1232 Pfam JmjC domain, hydroxylase 378 494 IPR003347 -
Bpe09g00662 1232 Pfam F/Y-rich N-terminus 1008 1051 IPR003888 GO:0005634
Bpe09g00662 1232 SUPERFAMILY Clavaminate synthase-like 346 538 - -
Bpe09g00662 1232 ProSiteProfiles JmjC domain profile. 345 511 IPR003347 -
Bpe09g00662 1232 PANTHER LYSINE-SPECIFIC DEMETHYLASE 818 1229 - -
Bpe09g00662 1232 PANTHER LYSINE-SPECIFIC DEMETHYLASE 76 697 - -
Bpe09g00662 1232 Pfam F/Y rich C-terminus 1058 1142 IPR003889 GO:0005634
Bpe09g00662 1232 Gene3D Cupin 127 495 - -
Bpe09g00662 1232 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Bpe09g00662 1232 SMART fyrn_3 1010 1054 IPR003888 GO:0005634
Bpe09g00662 1232 PANTHER JUMONJI 14-RELATED 818 1229 - -
Bpe09g00662 1232 PANTHER JUMONJI 14-RELATED 76 697 - -
Bpe09g00662 1232 ProSiteProfiles FYR domain FYRC motif profile. 1056 1146 IPR003889 GO:0005634
Bpe09g00662 1232 ProSiteProfiles FYR domain FYRN motif profile. 996 1054 IPR003888 GO:0005634
Bpe09g00662 1232 SMART cupin_9 345 511 IPR003347 -
Bpe09g00662 1232 Pfam C5HC2 zinc finger 601 651 IPR004198 -
Bpe09g00662 1232 Pfam jmjN domain 143 176 IPR003349 -
Bpe09g00662 1232 Gene3D - 1003 1138 - -
Bpe09g00662 1232 SMART JmjN_1 141 182 IPR003349 -
Bpe09g00662 1232 SMART fyrc_3 1060 1154 IPR003889 GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00417 Bpe-Chr6:15565904 Bpe09g00662 Bpe-Chr9:15252648 0 dispersed
Bpe08g00806 Bpe-Chr8:10063978 Bpe09g00662 Bpe-Chr9:15252648 1.22E-62 dispersed
Bpe09g00662 Bpe-Chr9:15252648 Bpe11g01034 Bpe-Chr11:7672353 2.96E-24 dispersed
Bpe09g00662 Bpe-Chr9:15252648 Bpe02g01049 Bpe-Chr2:11713484 1.62E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21896 PF02373 JmjC 3.40E-46 CL0029 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00662 - - mcha:111018179 1506.12