Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00662 ATGGGGACAAAACTTGTGCAAATTTGTGTCAAAGAAGAGAATGATGACTTTCCATCAGTTCCACCGGGCTTTGAGGCGTTGACATCTTTTGCCGTCCAGAAGATAGAAGATAATTTTCAACGAGGAAGTGACAATTTGATTAGTTGCATGCCTTCCACTAGTATTTCGGAAACACAATCTGCTCCGGACAGCACTCTTGATACTAAGATAACAAGATCCCTACGACCAAGACCATGTATTAACTATGGTCTATACGACAGCTACTGTGATGGTGTATTTGATTCTGAGATGGTTGAACAAAATTTATCTTTGAAGCCTCCTCTTCCCAAGGGGGTAATTCGGGGTTGTGCAGAGTGTAGTACTTGCCAAAAGGTGACTGCAAGATGGCATCCCAAAGAGTCTTGCAGACCCAATATTGAGGACGCTCCCATTTTTTATCCAACTGAAGAGGACTTTGACGATACCTTGAGATATATATCTAGTATACGTGCAAAAGCTGAACCCTATGGGATCTGTCGCATTGTTCCTCCCTCTTCTTGGAAACCTCCCTGTCCTCTACAGGAACTAGTGAAATGGACGAGTTCCAAATTTGCTACTCGTGTCCAGAGGATTGACAAACTTCAGAATCGAGATTCATTGAGAAAGATGTCAAGGACTCATGGCCAAATGAAGAGAAAAAGAAGAAGAAATGCACGCATGGGGGTAGATTGTGCTATGGGTAATGGAGGACTAGGAGACACGGAAAGCTTTGGATTTGAACCTGGTTTAGAGTTTACTTTGGAAACATTTAAAAAATATGCAGATGACTTCAAAATGCAGTATTTTAGTAGCACCGACGTTGATTCTTTAATTGGAATTCAATTGAAAGAGAATCATGAGCCATCGTTGGAGAATATTGAGGGGGAATATTGGAGGATGGTAGAGAAACCTACTGAGGAAATTGAGGTGTTATACGGGGCAGATATTGAAACCGGAGTTTTTGGTAGCGGTTTTCCTAAAATTTCTGGCCAAGTTGATTCAACTTCAGATGAAAAATATGTAACATCAGGTTGGAATTTGAACAATTTTCCAAGGCTTCCTGGATCTGTTCTTTCCTATGAAAGCAGTGATATTTCAGGTGTTTTGGTGCCGTGGCTGTATGTTGGGATGTGCTTTTCATCCTTTTGCTGGCATGTTGAAGATCATCACCTATATTCATTGAATTACATGCATTGGGGTGATCCAAAAATTTGGTATGGCGTCCCAGGGAAGGATGCCTGCAAATTAGAGGATGCTATGAGAAAGCATTTGCCTGATCTTTTTGAGGAACAACCTGATTTACTTCATAAGCTGGTCACACAACTTTCCCCTTCCATATTAAAGTCTGAGGGAGTTCCTGTATATAGGTGCACTCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGAGCATATCATTCAGGATTCAATTGTGGTTTCAACTGTGCTGAGGCAGTTAATGTTGCACCAGTTGATTGGTTACCACATGGTCAAATTGCCATAGAATTATACCGTAAGCAAGGAAGAAGAACTTCTATTTCCCATGATAAGTTATTGCTTGGAGCTGCTAGAGAAGCTGTAAAAGCACATTGGGAGCTTAATTTACTGAAGAAGAATACTTCAGATAATTTAAGGTGGAAAGATGTCTGCGGAAAAGATGGGGTTTTAGCAAAATCTCTCAAGATGCGGATTGAAATGGAGTGTATCCGACGCAATACTATATGCAGTTCTTCACAGGCAGTGAAGATGGAGAGCAGCTTTGATGCCACTAACGAGAAGGAATGCAGTTTATGCTTTTTTGACTTGCACCTCTCTGCGGTTAGTTGCTGTTGTTCCCCAGATAAATACGCATGCTTGAATCACGTGAAGCAGTTTTGCTCCTGTGCTCAGGCTGCTAGAATTTTCCTATTCCGATATGAGATTAGTGAATTGAATATCCTTGTCGAGGCTTTGGAAGGGAAATTAAGTGCAATTTATAGATGGGCTAAACTGGATCTTGGATTGGCTCTAAGTTCTCACATCTCGAAAGACAAGATGCATAATAGTAGATTAATCAAATCATCTGAAGGAGCAGAACTTAAAGATTTGGCATTACAACAATCAAGTGGTTATCTTAAAGATTTACATTGGAGGGAATCATTTACAGAGGTTCCAAAAACTTCCAGTGGAATTACTGGAGATATCTCTTCTCAACACAACAACGAATTAGCAGAAGCTATATCAACATTGAAGATCAAAGAATTACTGTCGAAATCTAATGGTTTGTTAAAGGAAATTGAAAAGACGAATCATGACTTTAAATTGAGGAAAGAAGAACACAATGGTACTGTTTTCAATTTGACATCTGCAAGTGGCCAGTTGTCTCCGAAAGACGTAAAACATTGTGTAAATCCAGTTTCCAGAAAAGGAAGAGATGATAAGGCTTCACTTTTTAAACCCAAGAATGTAATACTCCTAAGTGACGATGAAGGTGATAATGAGCCTAAAGGGTCAGTTTTGGAAGAAAAAGAAAGTTCTTTAGCAAGGCGATTAGAAGACTCCGACAGGTTGGCTGGAGCTGATACTAAGGCAATCCTTTGTTATCATGATAAAGATACAAACTTGATCACCCCATTGACTGATGCAGCAGTAATGGATGAGAAGGATGTCGTTTATCAGCCTCAGAAGAAACTGAAAACTTGTTCAGCTAATGTTGTGCCAGTAAAAATCGACCACCCTGAAAAAAATAGGTCAATGTCAGGAAATGCTAGTCCAGAGAATGCCATTTGTAACCTAGATTCTCCGGAGGAAGTTATAAATGGTCGAGTTCTTTCAACCCAAATATGTAGTTCTGGAAAGATTGATAACGAGGATAGGGTTTGTCTTTCAAACTTTGTGGGCAATGAAAGAAGTACACACGGAAATCTTTCTTGTTCCAAAAATCATTTAAACAGGTACTTCCGGCAAAAGGGTCCTAGAATAGCAAAGGTCGTAAGAAGGATCAACTGTAACGTAGAGCCTTTAGAATTTGGAGTAGTGGTTTCTGGAAAGTGTTGGTCTAACAGTCTGAGCATTTTTCCTAAAGGATTTAAGAGCCGAGTCAGGTTCATAAGCGTCTTGGATCCATCCAACATGGCCTACTATGTTTCAGAGATTCTTGATGCTGGAGTAGATAGACCTCTATTCATGGTTTCGCTGGAACAATGCCCAGATGAGGTGTTTATACATGTTTCACCAGCCCGTTGTTGGGAATTAGTGAGAGAGAGAGTGAATCAAGAGATCTCTAAGCATCATTTGTTAGGAAGAATGGATCTTCCTCCATTGCAGCCTCCTAAGAGTTTAGATGGTTTTGAAATGTTTGGATTCACTGCACCAGCTATTGTGCAGGCCATCGAAGCAATGGATCGAAATCGAGTCAGCACCGAGTATTGGGACTCACGACCATATTCTCGGCCTCAAATACAAATGGTACCTCCTTCGCAATCAATAACCATCAATAAAAATCCACAAAGAGTGTCAGAAAATAGAACCAATAATGGGTATTTGGCGGGAACCGATTTGATACTCCAGGGGTTATTCAAGAAGGCAAATCCAGAAGAATTGCACTCATTGTATCGCATCTTAAGTGACAAGAAGCAAAAATCTGATCAAGGGGTGGTGATAAAACTTCTCAGCGAAGAGATTCATCATCGCCCGCAATGA 3699 40.44 MGTKLVQICVKEENDDFPSVPPGFEALTSFAVQKIEDNFQRGSDNLISCMPSTSISETQSAPDSTLDTKITRSLRPRPCINYGLYDSYCDGVFDSEMVEQNLSLKPPLPKGVIRGCAECSTCQKVTARWHPKESCRPNIEDAPIFYPTEEDFDDTLRYISSIRAKAEPYGICRIVPPSSWKPPCPLQELVKWTSSKFATRVQRIDKLQNRDSLRKMSRTHGQMKRKRRRNARMGVDCAMGNGGLGDTESFGFEPGLEFTLETFKKYADDFKMQYFSSTDVDSLIGIQLKENHEPSLENIEGEYWRMVEKPTEEIEVLYGADIETGVFGSGFPKISGQVDSTSDEKYVTSGWNLNNFPRLPGSVLSYESSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPGKDACKLEDAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCTQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYRKQGRRTSISHDKLLLGAAREAVKAHWELNLLKKNTSDNLRWKDVCGKDGVLAKSLKMRIEMECIRRNTICSSSQAVKMESSFDATNEKECSLCFFDLHLSAVSCCCSPDKYACLNHVKQFCSCAQAARIFLFRYEISELNILVEALEGKLSAIYRWAKLDLGLALSSHISKDKMHNSRLIKSSEGAELKDLALQQSSGYLKDLHWRESFTEVPKTSSGITGDISSQHNNELAEAISTLKIKELLSKSNGLLKEIEKTNHDFKLRKEEHNGTVFNLTSASGQLSPKDVKHCVNPVSRKGRDDKASLFKPKNVILLSDDEGDNEPKGSVLEEKESSLARRLEDSDRLAGADTKAILCYHDKDTNLITPLTDAAVMDEKDVVYQPQKKLKTCSANVVPVKIDHPEKNRSMSGNASPENAICNLDSPEEVINGRVLSTQICSSGKIDNEDRVCLSNFVGNERSTHGNLSCSKNHLNRYFRQKGPRIAKVVRRINCNVEPLEFGVVVSGKCWSNSLSIFPKGFKSRVRFISVLDPSNMAYYVSEILDAGVDRPLFMVSLEQCPDEVFIHVSPARCWELVRERVNQEISKHHLLGRMDLPPLQPPKSLDGFEMFGFTAPAIVQAIEAMDRNRVSTEYWDSRPYSRPQIQMVPPSQSITINKNPQRVSENRTNNGYLAGTDLILQGLFKKANPEELHSLYRILSDKKQKSDQGVVIKLLSEEIHHRPQ 1232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15252648 15263488 + Bpe024377.2 Bpe09g00662 109062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00662 1232 Pfam JmjC domain, hydroxylase 378 494 IPR003347 -
Bpe09g00662 1232 Pfam F/Y-rich N-terminus 1008 1051 IPR003888 GO:0005634
Bpe09g00662 1232 SUPERFAMILY Clavaminate synthase-like 346 538 - -
Bpe09g00662 1232 ProSiteProfiles JmjC domain profile. 345 511 IPR003347 -
Bpe09g00662 1232 PANTHER LYSINE-SPECIFIC DEMETHYLASE 818 1229 - -
Bpe09g00662 1232 PANTHER LYSINE-SPECIFIC DEMETHYLASE 76 697 - -
Bpe09g00662 1232 Pfam F/Y rich C-terminus 1058 1142 IPR003889 GO:0005634
Bpe09g00662 1232 Gene3D Cupin 127 495 - -
Bpe09g00662 1232 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Bpe09g00662 1232 SMART fyrn_3 1010 1054 IPR003888 GO:0005634
Bpe09g00662 1232 PANTHER JUMONJI 14-RELATED 818 1229 - -
Bpe09g00662 1232 PANTHER JUMONJI 14-RELATED 76 697 - -
Bpe09g00662 1232 ProSiteProfiles FYR domain FYRC motif profile. 1056 1146 IPR003889 GO:0005634
Bpe09g00662 1232 ProSiteProfiles FYR domain FYRN motif profile. 996 1054 IPR003888 GO:0005634
Bpe09g00662 1232 SMART cupin_9 345 511 IPR003347 -
Bpe09g00662 1232 Pfam C5HC2 zinc finger 601 651 IPR004198 -
Bpe09g00662 1232 Pfam jmjN domain 143 176 IPR003349 -
Bpe09g00662 1232 Gene3D - 1003 1138 - -
Bpe09g00662 1232 SMART JmjN_1 141 182 IPR003349 -
Bpe09g00662 1232 SMART fyrc_3 1060 1154 IPR003889 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00662 - - - mcha:111018179 1506.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00417 Bpe-Chr6:15565904 Bpe09g00662 Bpe-Chr9:15252648 0 dispersed
Bpe08g00806 Bpe-Chr8:10063978 Bpe09g00662 Bpe-Chr9:15252648 1.22E-62 dispersed
Bpe09g00662 Bpe-Chr9:15252648 Bpe11g01034 Bpe-Chr11:7672353 2.96E-24 dispersed
Bpe09g00662 Bpe-Chr9:15252648 Bpe02g01049 Bpe-Chr2:11713484 1.62E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g610 Blo10g00272 Blo11g00440 . . . Bpe09g00662 Bma13g00412 . . . . Cma12g00959 . Car12g00919 . Cpe07g00798 . . . . . . . . . . . . . . . Cone10ag0643 Cone3ag0673 . . . Csa02g00757 . Cme05g01133 . . . . . . . . . Cmo05g00802 Cmo12g00962 . . . . . . Bhi06g01091 . . . . . . Cla11g01036 Cam11g1090 . Cco11g1094 Clacu11g1252 Cmu11g1088 Cre11g1512 . . Chy05g00772 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe09g00662 . 1 1230 JUMONJI Transcription Factor Family AT1G08620 53.3 0.0e+00 1218.8
Bpe02g01049 . 34 951 JUMONJI Transcription Factor Family AT1G30810 50.4 2.3e-241 832.0
Bpe09g00662 . 123 701 JUMONJI Transcription Factor Family AT1G30810 56.8 6.9e-185 644.4
Bpe09g00662 . 124 667 JUMONJI Transcription Factor Family AT2G34880 54.4 3.3e-171 599.0
Bpe11g01034 . 49 387 JUMONJI Transcription Factor Family AT2G34880 64.0 1.2e-125 447.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21896 PF02373 JmjC 3.40E-46 CL0029 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe09g00662 Bpe_Chr09 FPKM 0.971132 1.417581 0.992273 1.414791 3.027783 3.205801 3.245246 1.740805 1.562887 2.262607