Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00685 ATGGAGCGCGATGCCGGAATTCCTTCGGCCAGAGTGGCAGTGACTGAGGGGCAGTCCTCGCCTCTGTCGCCGTCGTTGAGCGAAGATGCACTGTGGCAAATGAACTTGAGATCAAGTGAAACAATGGAAGGCGGGCCATATCCTGAGCGTCAAGGAGAGCCAGATTGTTCTTATTACATCAGAACCGGCATATGTAGATTCGGAGCAACATGCCGTTTTAATCATCCTCCCGACAGAAAGCTGGCTATTGCCACTGCAAGGATGAAGGGGGAATATCCTGAGAGAATCGGACAGCCGGAATGTCAGTACTATCTGAAAACTGGAACCTGCAAGTTTGGAGCAACATGCAAGTTTCATCATCCTAGAGACAAAGCTGGGATTGCTGGAAGAGTTTCCTTAAATATTTTAGGATATCCGCTTCGTCCGAGCGAGATTGAATGTGCTTATTATTTAAGAACTGGGATGTGCAAATTCGCAAGTACGTGTAAATTCCATCACCCTCAACCATCTAATATGATGGTTCCCTTACGCGGTTCTCCTGTTTATCCGACTGTCCGGTCTCCAACTACTAGTCAACAATCATATCAAGGAGAAATTACAAATTGGTCAAGAGCGTCTTTTATTCCAAGTCCAAGATGGCAAGGCCCCTCTAGTTATCCGCCCTTTATTCTACCGCAAGGACTAGTTTCCGTTCAAGGTTGGAATGCAAACAGTGGTCCTTTGGGATCAGTTTCTTCTTCAGAGAGTCAGCAACAAACATCGACAATTAGTCAGGTTTATGGAGCTTCACGTCAAAACGAATCTGGTAGTACAGTCCATGAAGTACCATTTTCTCTATTCCGTTCAGGCTCCGTCCCTGTTGGGTACTATGCATTGCAGAGGGATAATGTATTCCCCGAGCGACCTGGTGAGCCCGAGTGTCAGTTTTACATGAAAACTGGTGATTGCAAATTTGGCTTAGTCTGTCGATTCCACCATCCGAGAGAGAGACTACTACCAGCTCCAGACTGTGTTTTGAGCCCCATCGGCCTTCCCTTACGTCCGGGAGAACCTTTATGCCTCTTCTACTCTCGTTATGGTATCTGCAAGTTCGGTCCAAGCTGCAAATTCGACCACCCGATGAGAATCTTCTCATACAATTTCGCCGCATCGCAGTCTTCGGATTTCTCAGTTCGTCGTTTATTGGGTTCATCGTCAGGAACATCAGCCCTAAATTTGTCCCCCGAAGGACTGATTGAAGCAGGTTCTACAAAGCCGAGGAGGCTCTCACTATCAGAAAGTAGACAGATGTCTTCTAGTGGTGACAATATTGACATAGCCGAATGA 1326 46.83 MERDAGIPSARVAVTEGQSSPLSPSLSEDALWQMNLRSSETMEGGPYPERQGEPDCSYYIRTGICRFGATCRFNHPPDRKLAIATARMKGEYPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNILGYPLRPSEIECAYYLRTGMCKFASTCKFHHPQPSNMMVPLRGSPVYPTVRSPTTSQQSYQGEITNWSRASFIPSPRWQGPSSYPPFILPQGLVSVQGWNANSGPLGSVSSSESQQQTSTISQVYGASRQNESGSTVHEVPFSLFRSGSVPVGYYALQRDNVFPERPGEPECQFYMKTGDCKFGLVCRFHHPRERLLPAPDCVLSPIGLPLRPGEPLCLFYSRYGICKFGPSCKFDHPMRIFSYNFAASQSSDFSVRRLLGSSSGTSALNLSPEGLIEAGSTKPRRLSLSESRQMSSSGDNIDIAE 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15427289 15430378 + Bpe024397.1 Bpe09g00685 109085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00685 441 Gene3D - 127 174 - -
Bpe09g00685 441 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872
Bpe09g00685 441 Gene3D - 48 126 - -
Bpe09g00685 441 Gene3D - 300 386 - -
Bpe09g00685 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 374 IPR000571 GO:0046872
Bpe09g00685 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 168 IPR000571 GO:0046872
Bpe09g00685 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 122 IPR000571 GO:0046872
Bpe09g00685 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 328 IPR000571 GO:0046872
Bpe09g00685 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 77 IPR000571 GO:0046872
Bpe09g00685 441 SUPERFAMILY CCCH zinc finger 305 331 IPR036855 GO:0046872
Bpe09g00685 441 MobiDBLite consensus disorder prediction 420 441 - -
Bpe09g00685 441 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 13 438 - -
Bpe09g00685 441 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Bpe09g00685 441 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872
Bpe09g00685 441 PANTHER PROTEIN PHOSPHATASE RELATED 13 438 - -
Bpe09g00685 441 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872
Bpe09g00685 441 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Bpe09g00685 441 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Bpe09g00685 441 SMART c3hfinal6 301 328 IPR000571 GO:0046872
Bpe09g00685 441 SMART c3hfinal6 347 374 IPR000571 GO:0046872
Bpe09g00685 441 SMART c3hfinal6 50 77 IPR000571 GO:0046872
Bpe09g00685 441 MobiDBLite consensus disorder prediction 1 26 - -
Bpe09g00685 441 SUPERFAMILY CCCH zinc finger 350 374 IPR036855 GO:0046872
Bpe09g00685 441 SUPERFAMILY CCCH zinc finger 145 169 IPR036855 GO:0046872
Bpe09g00685 441 MobiDBLite consensus disorder prediction 415 441 - -
Bpe09g00685 441 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Bpe09g00685 441 SUPERFAMILY CCCH zinc finger 55 78 IPR036855 GO:0046872
Bpe09g00685 441 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00685 Bpe-Chr9:15427289 Bpe11g00186 Bpe-Chr11:1278824 1.82E-110 dispersed
Bpe15g00932 Bpe-Chr15:19089342 Bpe09g00685 Bpe-Chr9:15427289 1.00E-12 dispersed
Bpe11g01275 Bpe-Chr11:9552192 Bpe09g00685 Bpe-Chr9:15427289 0 wgd
Bpe11g01275 Bpe-Chr11:9552192 Bpe09g00685 Bpe-Chr9:15427289 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21897 PF00642 zf-CCCH 1.60E-09 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00685 - - qsu:112012560 714.531