Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe09g00719 ATGCCCGCTCCAAAAGGAAGGCAAGGTAGGGAATTAGACGCTTCTTCAGATGCCGACGACGTCGATTATGAATTGGAGCGAGTTAAGGACCGGATCGAATCGTCACGAGGAAGCCGATTCAATCTGCTTCAGAACGAGTTGCAGCTCGATTCGACTACTGATCGAAAATTTAGCCACGAAAGGCTTATCAATGGGATCAGAGATTTCTCCAATGCACTGGTTATTCATCCCGAAAACAGGTTGTATAAGGCGTGGATGAAATTCATTCTGATATGGGCAGTGTACTCGTCCTTTTTCACCCCCTTGGAATTTGGGTTCTTTAGAGGATTGCCAGAGCGCCTACAGTTCCTAGATATTGCCGGACAATTTGCTTTCTTCCTTGACATTATTTTGCAGTTCTTTGTTGCTTATAGAGACAACCAGACTTACAGAATGGTCTATGAGCGTGCTCCTATAGCACTCAGATACATGAAATCTACTTTTGTGCTTGATTTGCTTAGCTGTCTGCCTTGGGATGCTATCTACAAGGCTTATGGGAAACGAGAAGAAGTGAGGTACCTTATGTGGATCAGGTTAATTCGTTTATGCAAAGTCTCTGAATTTTTTCAGAAGCTTGAGAAGGATATTCGGGTAAAATACATGTTTACAAGGATAGTAAAGCTTATTGTCGTTGAGCTCTATTGTACGCACACAGCAGCTTGCATCTTTTACTACTTGGCTACTACGCTGCCTCCTTCCCAAGAGGGCTACACATGGATTGGAAGCTTAAAGATGGGGGATTACAGTTACTCGCATTTCAGAGAAATTGATATATGGACCCGCTACACAACGTCCATGTACTTTGCCATTGTTACCATGACTACGGTTGGTTATGGAGATATCCATGCAGTTAATATGAGGGAAATGATATTCATAATGATTTATGTCTCTTTTGACATGGTTCTTGGGGCGTATTTGGTTGGTAATATGACCGCCATTATTGTAAAAGGTTCAAAGACAGAAAGATTCAGGGACAAAATGACAGATATTATGAAATATATGAATAGAAATAGGCTTGGAAAGGACATTCGTAACCAGGTTAAAGGCCATTTACGTTTGCAGTATGAACATAGCTACACTGAGGCTGCTGTTCTGCAGGAGATCCCTGTCGCTATCCGTGCTAAGATTTCACAAACTCTGTATTTGTCATACATGGAAAATGTTGCTCTTTTCCAGGGATGCTCATCTGAGTTCATCAATCAAATAGTCATTAGGCTCCATGAAGAGTTTTTCCTCCCGGGAGAAGTGATAATGGAACCAGGAACTGTTGTTGATCAACTTTATTTTGTTTGTCACGGGATGCTGGAGGAAGTAGGCGTAAGGGAAGATGGGTCGGAAGAGACTATTTCTCTGCTGCAACCCAACAGTTCATTTGGAGAAGTCTCCATTGTTTGTAACATTCCTCATCCGTATGCTGTCCGAGTTTGTGAATTATGCAGGCTCGTGAGGCTGGACAAACAGTCTTTTACAAATATTCTTGAAATATACTTTTGTGATGGGCGGAAAATCTTGAACAACTTACTAAAAGGAAAAGAATCTAACATTCGAGTAAAGCAACTAGAGTCAGACATCACATTTCATATAGGGAGGCAGGAGGCAGGGCTGTCGTTGAAGGTGAATAGCGCTGCTTATGAAAACGATTCGAAAGAGAATCAACTGCTTTTGACTTGTATGGCCAGTTGTTTTCTACAGCATATTGCAGCTTCTAGAGGATTCGAAGATGTTACGAGTTTCCTCATTCATGAAGGAGTAGATGTCAATCTCAAAGATAATTTTGGAAACACGCCCTTATTTGAAGCTTTAAAGAATGGACACGATGGAGTTGCTGCTTTACTAGTCAACGAAGGTGCCTCCTTTGATATTGAAAACGGAGGAACTTTTCTCTGTACAGCAGTCGTACGAGGGGAAACTGACATTCTTAAAAGGGTTTTGAGCTATGGCATGGATCCAAACTCCAAAGACTATGATCATCGAACACCCCTTCATGTAGCTGCATCTCAAGGCTTATATTTGATGGCAAAGTTGCTAGTGGAGGCTGGGGCCAGTGTTTTCTTAAAGGACAGATGGGGAAACACTCCACTTGATGATGGGCGAACGTGTGGAAATAAAAATTTAGTGAAGCTACTTGAAGATGCGAAGGATGTTCAACTGTCTGAATATTCTTCTTCTGAAGAAATCACTGAAAGTTTACCTTCAAGCATAAGAAAATGCACTGTTTTCCCTTTCCACCCGTGGGATCCCGAAGATCGAAGAAAATCTGGAATTGTGCTGTGGGTCCCGCTTACCATTGAAGAGCTGGTCACAACAGCATCAGAGCATCTGCAAATTTCTGTTGCTGCTTCCTGCATATTATCAGAAGATGCTGGTAAGATACTTGATGCTTCCATGATTGATAGTGGTCAAAAACTGTATTTGGTCAGCCAAACACAATAG 2472 41.87 MPAPKGRQGRELDASSDADDVDYELERVKDRIESSRGSRFNLLQNELQLDSTTDRKFSHERLINGIRDFSNALVIHPENRLYKAWMKFILIWAVYSSFFTPLEFGFFRGLPERLQFLDIAGQFAFFLDIILQFFVAYRDNQTYRMVYERAPIALRYMKSTFVLDLLSCLPWDAIYKAYGKREEVRYLMWIRLIRLCKVSEFFQKLEKDIRVKYMFTRIVKLIVVELYCTHTAACIFYYLATTLPPSQEGYTWIGSLKMGDYSYSHFREIDIWTRYTTSMYFAIVTMTTVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLVGNMTAIIVKGSKTERFRDKMTDIMKYMNRNRLGKDIRNQVKGHLRLQYEHSYTEAAVLQEIPVAIRAKISQTLYLSYMENVALFQGCSSEFINQIVIRLHEEFFLPGEVIMEPGTVVDQLYFVCHGMLEEVGVREDGSEETISLLQPNSSFGEVSIVCNIPHPYAVRVCELCRLVRLDKQSFTNILEIYFCDGRKILNNLLKGKESNIRVKQLESDITFHIGRQEAGLSLKVNSAAYENDSKENQLLLTCMASCFLQHIAASRGFEDVTSFLIHEGVDVNLKDNFGNTPLFEALKNGHDGVAALLVNEGASFDIENGGTFLCTAVVRGETDILKRVLSYGMDPNSKDYDHRTPLHVAASQGLYLMAKLLVEAGASVFLKDRWGNTPLDDGRTCGNKNLVKLLEDAKDVQLSEYSSSEEITESLPSSIRKCTVFPFHPWDPEDRRKSGIVLWVPLTIEELVTTASEHLQISVAASCILSEDAGKILDASMIDSGQKLYLVSQTQ 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15769287 15786978 - Bpe024426.2 Bpe09g00719 109119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe09g00719 823 PANTHER POTASSIUM CHANNEL SKOR-LIKE 11 822 - -
Bpe09g00719 823 PRINTS EAG/ELK/ERG potassium channel family signature 227 237 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bpe09g00719 823 PRINTS EAG/ELK/ERG potassium channel family signature 275 292 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bpe09g00719 823 PRINTS EAG/ELK/ERG potassium channel family signature 319 328 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bpe09g00719 823 PRINTS EAG/ELK/ERG potassium channel family signature 118 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bpe09g00719 823 Gene3D Jelly Rolls 387 526 IPR014710 -
Bpe09g00719 823 ProSiteProfiles Ankyrin repeat profile. 578 604 IPR002110 GO:0005515
Bpe09g00719 823 Pfam Ankyrin repeat 670 700 IPR002110 GO:0005515
Bpe09g00719 823 ProSiteProfiles KHA domain profile. 749 823 IPR021789 -
Bpe09g00719 823 ProSiteProfiles Ankyrin repeat region circular profile. 636 667 - -
Bpe09g00719 823 SUPERFAMILY Ankyrin repeat 576 724 IPR036770 -
Bpe09g00719 823 Gene3D - 83 329 - -
Bpe09g00719 823 SUPERFAMILY Voltage-gated potassium channels 77 328 - -
Bpe09g00719 823 Pfam Ankyrin repeats (3 copies) 578 667 IPR002110 GO:0005515
Bpe09g00719 823 SUPERFAMILY cAMP-binding domain-like 331 521 IPR018490 -
Bpe09g00719 823 Pfam KHA, dimerisation domain of potassium ion channel 748 818 IPR021789 -
Bpe09g00719 823 Pfam Cyclic nucleotide-binding domain 423 507 IPR000595 -
Bpe09g00719 823 CDD CAP_ED 403 517 IPR000595 -
Bpe09g00719 823 PANTHER POTASSIUM CHANNEL AKT1 11 822 IPR045319 GO:0005249|GO:0006813
Bpe09g00719 823 ProSiteProfiles Ankyrin repeat region circular profile. 669 701 - -
Bpe09g00719 823 SMART cnmp_10 403 521 IPR000595 -
Bpe09g00719 823 ProSiteProfiles Ankyrin repeat region circular profile. 605 636 - -
Bpe09g00719 823 Pfam Ion transport protein 83 329 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bpe09g00719 823 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Bpe09g00719 823 SMART ANK_2a 636 665 IPR002110 GO:0005515
Bpe09g00719 823 SMART ANK_2a 572 601 IPR002110 GO:0005515
Bpe09g00719 823 SMART ANK_2a 669 698 IPR002110 GO:0005515
Bpe09g00719 823 SMART ANK_2a 605 634 IPR002110 GO:0005515
Bpe09g00719 823 ProSiteProfiles Ankyrin repeat profile. 669 701 IPR002110 GO:0005515
Bpe09g00719 823 ProSiteProfiles Ankyrin repeat profile. 636 668 IPR002110 GO:0005515
Bpe09g00719 823 Gene3D Helix hairpin bin 330 386 - -
Bpe09g00719 823 Gene3D - 548 730 IPR036770 -
Bpe09g00719 823 ProSiteProfiles cAMP/cGMP binding motif profile. 403 523 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01364 Bpe-Chr2:17229230 Bpe09g00719 Bpe-Chr9:15769287 0 dispersed
Bpe09g00719 Bpe-Chr9:15769287 Bpe12g00649 Bpe-Chr12:12151767 0 dispersed
Bpe09g00719 Bpe-Chr9:15769287 Bpe01g00497 Bpe-Chr1:3177400 1.28E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe09g00719 K21867 - csin:114310246 1217.6