Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00016 ATGAAGCTCATTTATGGGATAACAGTTGTAAGAAAGAGGGACAAAGCAGGAAAGGAAGACAAGGTTAATACATCCAGAAGCTTTCCCTTTCAATGGCGGACTCTAATTTTTGTTCTTGGGTACGATATGGAAGAGAAGGCTGCCAAAGCTTATGATCTTGCTGCCATTAAGTATTGGGGACCCTCAACTCACATTAACTTCCCTGTTGAAACTTACCAGAAAGAGATCGAAGAGATGAGGAACATGACAAGACAGGAGTACGTTGCTCATCTTAGAAGAAAGAGTAGTGGATTCTCTAGAGGAGCTTCCATTTACAGAGGAGTAACAAGACACCATCAACATGGAAGATGGCAAGCTCGGATTGGAAGAGTTGCTGGAAATAAAGATCTTTACCTTGGAACATTCAGCACTCAAGAGGAAGCAGCTGAAGCCTATGATGTCGCGGCCATTAAATTCAGAGGCTTAAACGCTGTGACCAACTTCGACATTGCAAGATACGCAGTGGAGAGGATAATGGAAAGCAATACCCTCCTCGCCGGAGACTCAGCAAAGCGTAATAAAGGAATCGAAGCTGGAAAAGAGCCGAGTATCAACGGAGAAGAGGGTGTAGGTTTGATGTTGCAGCAGAGCTCTAATGGCGGGGAGAAAATGGTGGGCTATCCGTCCTCTCAGCTTCCAGGCTTAGAAAAATTTGCACATTCGATTTCCCCAGTTTTTGCTGCTTGGGCAGATGCCTGA 738 44.99 MKLIYGITVVRKRDKAGKEDKVNTSRSFPFQWRTLIFVLGYDMEEKAAKAYDLAAIKYWGPSTHINFPVETYQKEIEEMRNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLNAVTNFDIARYAVERIMESNTLLAGDSAKRNKGIEAGKEPSINGEEGVGLMLQQSSNGGEKMVGYPSSQLPGLEKFAHSISPVFAAWADA 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 280149 281424 + Bpe002317.1 Bpe10g00016 109138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00016 245 PRINTS Ethylene responsive element binding protein signature 144 164 IPR001471 GO:0003700|GO:0006355
Bpe10g00016 245 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Bpe10g00016 245 SUPERFAMILY DNA-binding domain 40 70 IPR016177 GO:0003677
Bpe10g00016 245 ProSiteProfiles AP2/ERF domain profile. 3 68 IPR001471 GO:0003700|GO:0006355
Bpe10g00016 245 CDD AP2 103 164 IPR001471 GO:0003700|GO:0006355
Bpe10g00016 245 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 37 194 - -
Bpe10g00016 245 SMART rav1_2 10 74 IPR001471 GO:0003700|GO:0006355
Bpe10g00016 245 SMART rav1_2 104 168 IPR001471 GO:0003700|GO:0006355
Bpe10g00016 245 SUPERFAMILY DNA-binding domain 103 163 IPR016177 GO:0003677
Bpe10g00016 245 Gene3D AP2/ERF domain 10 70 IPR036955 GO:0003700|GO:0006355
Bpe10g00016 245 Gene3D AP2/ERF domain 104 164 IPR036955 GO:0003700|GO:0006355
Bpe10g00016 245 ProSiteProfiles AP2/ERF domain profile. 104 162 IPR001471 GO:0003700|GO:0006355
Bpe10g00016 245 Pfam AP2 domain 104 154 IPR001471 GO:0003700|GO:0006355
Bpe10g00016 245 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 37 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00016 Bpe-Chr10:280149 Bpe11g01266 Bpe-Chr11:9463537 1.75E-08 dispersed
Bpe10g00016 Bpe-Chr10:280149 Bpe02g00465 Bpe-Chr2:3022571 4.90E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21903 PF00847 AP2 4.30E-11 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00016 K09285 - fve:101299427 287.73