Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe10g00016 | ATGAAGCTCATTTATGGGATAACAGTTGTAAGAAAGAGGGACAAAGCAGGAAAGGAAGACAAGGTTAATACATCCAGAAGCTTTCCCTTTCAATGGCGGACTCTAATTTTTGTTCTTGGGTACGATATGGAAGAGAAGGCTGCCAAAGCTTATGATCTTGCTGCCATTAAGTATTGGGGACCCTCAACTCACATTAACTTCCCTGTTGAAACTTACCAGAAAGAGATCGAAGAGATGAGGAACATGACAAGACAGGAGTACGTTGCTCATCTTAGAAGAAAGAGTAGTGGATTCTCTAGAGGAGCTTCCATTTACAGAGGAGTAACAAGACACCATCAACATGGAAGATGGCAAGCTCGGATTGGAAGAGTTGCTGGAAATAAAGATCTTTACCTTGGAACATTCAGCACTCAAGAGGAAGCAGCTGAAGCCTATGATGTCGCGGCCATTAAATTCAGAGGCTTAAACGCTGTGACCAACTTCGACATTGCAAGATACGCAGTGGAGAGGATAATGGAAAGCAATACCCTCCTCGCCGGAGACTCAGCAAAGCGTAATAAAGGAATCGAAGCTGGAAAAGAGCCGAGTATCAACGGAGAAGAGGGTGTAGGTTTGATGTTGCAGCAGAGCTCTAATGGCGGGGAGAAAATGGTGGGCTATCCGTCCTCTCAGCTTCCAGGCTTAGAAAAATTTGCACATTCGATTTCCCCAGTTTTTGCTGCTTGGGCAGATGCCTGA | 738 | 44.99 | MKLIYGITVVRKRDKAGKEDKVNTSRSFPFQWRTLIFVLGYDMEEKAAKAYDLAAIKYWGPSTHINFPVETYQKEIEEMRNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLNAVTNFDIARYAVERIMESNTLLAGDSAKRNKGIEAGKEPSINGEEGVGLMLQQSSNGGEKMVGYPSSQLPGLEKFAHSISPVFAAWADA | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 280149 | 281424 | + | Bpe002317.1 | Bpe10g00016 | 109138 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe10g00016 | 245 | PRINTS | Ethylene responsive element binding protein signature | 144 | 164 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe10g00016 | 245 | PRINTS | Ethylene responsive element binding protein signature | 105 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe10g00016 | 245 | SUPERFAMILY | DNA-binding domain | 40 | 70 | IPR016177 | GO:0003677 | |
Bpe10g00016 | 245 | ProSiteProfiles | AP2/ERF domain profile. | 3 | 68 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe10g00016 | 245 | CDD | AP2 | 103 | 164 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe10g00016 | 245 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 37 | 194 | - | - | |
Bpe10g00016 | 245 | SMART | rav1_2 | 10 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe10g00016 | 245 | SMART | rav1_2 | 104 | 168 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe10g00016 | 245 | SUPERFAMILY | DNA-binding domain | 103 | 163 | IPR016177 | GO:0003677 | |
Bpe10g00016 | 245 | Gene3D | AP2/ERF domain | 10 | 70 | IPR036955 | GO:0003700|GO:0006355 | |
Bpe10g00016 | 245 | Gene3D | AP2/ERF domain | 104 | 164 | IPR036955 | GO:0003700|GO:0006355 | |
Bpe10g00016 | 245 | ProSiteProfiles | AP2/ERF domain profile. | 104 | 162 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe10g00016 | 245 | Pfam | AP2 domain | 104 | 154 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe10g00016 | 245 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 | 37 | 194 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe10g00016 | Bpe-Chr10:280149 | Bpe11g01266 | Bpe-Chr11:9463537 | 1.75E-08 | dispersed | |
Bpe10g00016 | Bpe-Chr10:280149 | Bpe02g00465 | Bpe-Chr2:3022571 | 4.90E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21903 | PF00847 | AP2 | 4.30E-11 | CL0081 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe10g00016 | K09285 | - | fve:101299427 | 287.73 |