Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00025 ATGGACTCTGATGATAATTGCAGTAAAGGCCTTTTTCTAGCCTTGGGATTGGTCGGTGAAGAGGAAATCACCTCGAAAATCGCGAACCAAGGCCCTGGTTTGAAATCGAGCTTGAGCTTTATTGGCTCTAATGGCGGTTCTGACCCGTCTTTGAGGTTGGGTCTTTCTGGTGATGGTTTGTGTAGGCAGGCTTCTGCCCTAAGCCCCGTTTCTTCATTCTGTAGCGGGAGGGCTAAGAGAGAGAGGGAATTTAGTAGTGAGGATGTGGAGGCGGAGAAAGTTTCCTCAAGAGTTAGTGATGAAGACGAAGATGGCTCTAATTATAGAAAGAAACTTCGCTTAACTAAAGAACAGTCTGCTCTTTTAGAAGACAGCTTCAAACAGCATAGCACTCTTAACCCAAAGCAAAAGCAAGCTTTAGCAAGACAGCTAAATCTTCGACCTCGACAAGTTGAAGTTTGGTTTCAGAATAGAAGAGCCAGGACGAAGGTGAAGAAAACTGAGGTAGACTGTGAGCTATTGAAGAAATGCTGCGAGAATCTGGCTGAAGAAAACAGGAGACTGCAAAAGGAAGTAGAAGAGCTAAAAGCTGTGAAACGAGCTCACCCATTTTACGTGCAAATTCCTGCAACTGCAGCGACGCTAAGTCTCTGCCCTTCTTGCGAAAGGGTTGGTAGAGACGGCCATGGAAGATCTGCAGCTAGTGCTTCTGAGCTACCATTTTCAGTGGCTTCTTCTTCTTCTAACCCTCATTTTTTTAACCCTTTCACCAACTCCTCTGCAGCCTGTTAA 792 45.45 MDSDDNCSKGLFLALGLVGEEEITSKIANQGPGLKSSLSFIGSNGGSDPSLRLGLSGDGLCRQASALSPVSSFCSGRAKREREFSSEDVEAEKVSSRVSDEDEDGSNYRKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKVKKTEVDCELLKKCCENLAEENRRLQKEVEELKAVKRAHPFYVQIPATAATLSLCPSCERVGRDGHGRSAASASELPFSVASSSSNPHFFNPFTNSSAAC 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 368378 369385 + Bpe002327.1 Bpe10g00025 109147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00025 263 SMART halz 165 208 IPR003106 GO:0006355|GO:0043565
Bpe10g00025 263 PANTHER - 6 263 - -
Bpe10g00025 263 SMART HOX_1 107 169 IPR001356 GO:0003677
Bpe10g00025 263 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Bpe10g00025 263 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Bpe10g00025 263 Pfam Homeobox associated leucine zipper 165 198 IPR003106 GO:0006355|GO:0043565
Bpe10g00025 263 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 6 263 - -
Bpe10g00025 263 Coils Coil 171 201 - -
Bpe10g00025 263 CDD homeodomain 109 166 IPR001356 GO:0003677
Bpe10g00025 263 Pfam Homeodomain 109 163 IPR001356 GO:0003677
Bpe10g00025 263 Gene3D - 102 170 - -
Bpe10g00025 263 MobiDBLite consensus disorder prediction 85 110 - -
Bpe10g00025 263 SUPERFAMILY Homeodomain-like 97 165 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00136 Bpe-Chr4:920042 Bpe10g00025 Bpe-Chr10:368378 6.60E-62 dispersed
Bpe10g00025 Bpe-Chr10:368378 Bpe10g00572 Bpe-Chr10:12688150 1.04E-62 dispersed
Bpe10g00025 Bpe-Chr10:368378 Bpe15g00281 Bpe-Chr15:14286829 1.07E-90 wgd
Bpe10g00025 Bpe-Chr10:368378 Bpe02g00472 Bpe-Chr2:3063647 2.12E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21905 PF00046 Homeodomain 1.90E-16 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00025 K09338 - tcc:18611354 310.457