Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00029 ATGACCAGCTTCTATGGCTGCTCAGCTGAAGCGTTTCCTCCATTGACGGCAGAATCTGAAAGACCAGCAAAGCAGCTCAAATCCAACGGCTGTAAACCATCCAAACCCGCCTCTTCTTCCTCCTCCTCTCAAATCATCTCCTTCGGGAATTCAAGTTCGTCTCAGAAGTCTTCTGGTTTGGACTCAACTTTGAAGCCTAAGATTGAGACGAACACCACTTCTTCTCTCCTCGGCCATGGATCAAGTGAGAATATCCAGGGTCTGACGAAGAATGAAGGAACTAAGAGGGGCTTTGGGGCAGCAAGCAGAAGCCCTTTGCTTGCTCAAGATCATGTTTTAGCTGAGAGAAAGAGGAGAGAGAAACTCAGCCAGAGGTTCATCGCTCTTTCTGCTCTAATTCCTGGCCTGAAGAAGAACGATAAGGCTTCTGTTCTTGGAGACGCCATTGAACACGTGAAGCAGCTGCAGGAGCGTTTGAGGGAGCTGGAGGAACAGGCAACGAAGAAGACGATGGAATCCGTGGTTTTGGTGAAGAAAGCTCGTCTTTTTGCAGACGATAACGCTTCATCGGACGAAGAGTCAACTGGATTTTCCGACCAAAACCTCCCGGAAATCGAGGCAAGAGTCTCCGACAAGGAGGTTCTCGTTCGAATTCACTGTGAAAAACAAAACGGATTGTTGTCCCATACATTGAACGAAGTGGAGAAGCTTCATCTGTCAGTAGTTCATAGCAGTGCCTTGAAATTTGGCAAATCTACTCTTGATATCACCATTATTGCTAAGATGGACGATGGATTCTGTATGACAGTGAAGGAAATGGCGAAGAATCTGAGAACTGCTTTGCTGAACTTCAGTTCTGTTCAAGTCTGA 870 46.78 MTSFYGCSAEAFPPLTAESERPAKQLKSNGCKPSKPASSSSSSQIISFGNSSSSQKSSGLDSTLKPKIETNTTSSLLGHGSSENIQGLTKNEGTKRGFGAASRSPLLAQDHVLAERKRREKLSQRFIALSALIPGLKKNDKASVLGDAIEHVKQLQERLRELEEQATKKTMESVVLVKKARLFADDNASSDEESTGFSDQNLPEIEARVSDKEVLVRIHCEKQNGLLSHTLNEVEKLHLSVVHSSALKFGKSTLDITIIAKMDDGFCMTVKEMAKNLRTALLNFSSVQV 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 415172 416218 - Bpe002330.1 Bpe10g00029 109151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00029 289 Coils Coil 145 172 - -
Bpe10g00029 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 155 IPR011598 GO:0046983
Bpe10g00029 289 PANTHER BHLH TRANSCRIPTION FACTOR 18 284 - -
Bpe10g00029 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 172 IPR036638 GO:0046983
Bpe10g00029 289 CDD bHLH_AtNAI1_like 107 179 - -
Bpe10g00029 289 PANTHER TRANSCRIPTION FACTOR BHLH18-LIKE 18 284 - -
Bpe10g00029 289 MobiDBLite consensus disorder prediction 14 102 - -
Bpe10g00029 289 Gene3D - 108 178 IPR036638 GO:0046983
Bpe10g00029 289 MobiDBLite consensus disorder prediction 31 91 - -
Bpe10g00029 289 Pfam Helix-loop-helix DNA-binding domain 111 156 IPR011598 GO:0046983
Bpe10g00029 289 SMART finulus 112 161 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00029 Bpe-Chr10:415172 Bpe11g00336 Bpe-Chr11:2441302 4.52E-18 dispersed
Bpe10g00029 Bpe-Chr10:415172 Bpe10g00030 Bpe-Chr10:429994 0 tandem
Bpe10g00029 Bpe-Chr10:415172 Bpe13g00149 Bpe-Chr13:9200025 1.22E-74 wgd
Bpe10g00029 Bpe-Chr10:415172 Bpe06g00117 Bpe-Chr6:1875731 7.00E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21906 PF00010 HLH 1.10E-09 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00029 - - rcu:8288727 265.388