Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00106 GGACAGGGAAGACTAAAACGACGTCGTAAGAGGAGCAGACCAGAGAATGAGATTGCGGGGTTGAGAAAGAGAAAACTGAACGCAGAGCAACTGAGTCTTCTGGAAATGAACTTTGGAGATGAACACAAACTGGAATCTGAGAGAAAATATCGATTGGCTTCAGAACTGGGTCTTGATCCTCGTACAGTTTCCGTTTGGTTTCAGAACAGAAGGGCTCGTTGGAAGAGCAAGAAAATGGAGGAAGAATACTGTTCTTTGAAGAAAGCTCATGAGTCTGTTGTTGTACAGAAATCACAGCTTGAATCTGAGATAATGAAACTGAAGGAGCAGCTGTCGGAGGCTGAGATGGAGATCAAACGGCTGTCGAGCAACAGTCCAAGCTCGTCGTTGACTATGGGTGGCATGGATGAAGCACCATTTATCGGAGAATTCGGATATGTAGACGTATTCTACATGCAAGAAAATATTAATGTAATTAATGGAATGGAATGGGTTAATCTGTATAACTAA 510 42.75 GQGRLKRRRKRSRPENEIAGLRKRKLNAEQLSLLEMNFGDEHKLESERKYRLASELGLDPRTVSVWFQNRRARWKSKKMEEEYCSLKKAHESVVVQKSQLESEIMKLKEQLSEAEMEIKRLSSNSPSSSLTMGGMDEAPFIGEFGYVDVFYMQENINVINGMEWVNLYN 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1801236 1802266 + Bpe002407.1 Bpe10g00106 109228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00106 169 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 1 168 - -
Bpe10g00106 169 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 168 IPR045224 GO:0003700
Bpe10g00106 169 Pfam Homeodomain 24 75 IPR001356 GO:0003677
Bpe10g00106 169 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Bpe10g00106 169 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
Bpe10g00106 169 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Bpe10g00106 169 SUPERFAMILY Homeodomain-like 23 83 IPR009057 -
Bpe10g00106 169 Gene3D - 17 86 - -
Bpe10g00106 169 ProSiteProfiles 'Homeobox' domain profile. 22 77 IPR001356 GO:0003677
Bpe10g00106 169 SMART HOX_1 20 81 IPR001356 GO:0003677
Bpe10g00106 169 CDD homeodomain 22 78 IPR001356 GO:0003677
Bpe10g00106 169 Coils Coil 90 124 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe10g00106 Bpe13g00454 CCT
Bpe06g00054 Bpe10g00106 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00106 Bpe-Chr10:1801236 Bpe03g01259 Bpe-Chr3:31194409 3.85E-24 dispersed
Bpe10g00106 Bpe-Chr10:1801236 Bpe13g00454 Bpe-Chr13:12050748 2.97E-40 wgd
Bpe10g00106 Bpe-Chr10:1801236 Bpe06g00054 Bpe-Chr6:648161 2.62E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21913 PF00046 Homeodomain 6.90E-16 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00106 K09338 - egr:104419765 208.764