Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00121 ATGATGGAGAGTTCAATGAGAGCCAGTAGAGTGAGCAAGACACATACCTCTAAGCCATGGAAGCCAAGACAAAGTGGGTATGAACCGTCCGATACAGAGACTGAGTGGAACGAGAGCCCGTGGAATGATGATAACGAGATGAACAATATGGTGAGTTCTGGTAAGAATTCAAGAATGGAGTCTGCTGTACAAAGAAGCATCACTCCTATTAATCTCAGCCATAGACATCCAGCGTTTGATTTTGACGGCTCTGATCTCGGCCCGGAGAGAACGAAAATTATGAGCAAGTCACCATACAAGCTGCAGAGAGACGTCAGCCCATTGCCAATATCTGAGAGAAGAAGACATGTTTCCCCATATAAATATCATGACGATGAAAATAATTTTGATAGTAAAACCAGTCAGAAAACAACTCACCACCATAGAAGATCAGTCACTGCTCCAAGATTGAGAGTGAGAGAGGATCAACCAGGCTCAAACTATGGTCACACATCTCAAAGAAGAGAGAGACCACTTTCTCCAGTACCCAGAACAATTCTTCAACATCCAAGGGCAGCTTCCCATAAGATGTCTTCATCAGTTGGCGAACTAAACGAAATGATTGCCAATGTCAATATTTCTAAAGGTTTTCCATATGATGATCCAATACTTCACAGTACAGAGTCAATTTCACCGGGTAACATCTTTTTTTCTCAAGATCAAACATTAAAGAATAATATGACCAAAAGCTACCCTGGCCAAAAGCCTGAAATAATATCTCAAAGGGACTCTTCTTCTTCTTCACATCAACAAGCAAGAACATATGGAAAGTTTGATCAAAATGGTAGAGGGATATCATCTGGAATAGGTTTGTCAACGACTATATCTACCTCTGCTGTAAGCAGGCAAAGTAGCAGTAAAGTCAGCACGGGAAATAGCAAGATGAGTGATTCAAGTGTAACGACAACTGCAAGCATGAGAAAGTTCACAGAAAATAGACGAAAGAGTCAATCAGAGACATGGTTTGGTTGTATTAGGAAAGGACCATGCAGAACCTCAAAATCACCTGAAAAGAGAGCCTTTGATGAAGCTTCATTCATCGAGAAGGCGTTTGTGGTTGAAAATTTGAGACAGTTCTGGGCAGATAAATATCGACCCAGTTCTTTAAATGGATTTATCTGCCACAATCTACAGACTCAATTTCTCAGAGACATAGTGTCTTATGATATTCGTCCCCATATCTTGTTCAAGGGACCACCTGGTTCTGGGAAAAAAGCTCTTATTATGGCTTTTCTTCGTGAAGTATTTGGCGATGCAAGTTGGAACGTTTCTCATGATTTAAGATATTTCCAGATTCAGGAAAGAACAGCCATGCAAATTGTCATTCCAATAACATCAAGTACGCATCATTTGGAGATCAATGTCAGTTTAGAACCCAATGCTAAATATGCTTTAATGGGTTTGGTGAAGAAAATAAGCAGCGAGTATGACCTTCCTCCTGAAGCCAGCAACGTTAACTTGAAGGCGAATTATAAAGTCATGGTTCTTCATGGAGTAGAGAAAGCAGATGAGAACATTCAACACCTGATAAAATGGATTATGGACTGTCACTCTGATACCTGTAAACTTATACTTTGCTGTGAAGACGACATAGGGATCCTAGAATCTGTCAAAAATCGCTGCCAAGTTGTGGAGGTTAATGCCCCAGGGGCCAAACAGATCATAGAGGTTCTACTTCATATAGCTGGAAAGGAGGACTTCGATCTGCCTAGAACTTTTGCGGCTAAGATCGCTGCTAATTCAAAGAGTAATCTAAGAAAGGCAATCATGGCTCTTGAAGCAAGCAAAGCGCACAAATTGTTTTTGATCCAGGAGAGGATTCAAAAACTTCTGCTGGAATTCGTTCACCCGACTTTGATCCTTCAGAAGCTGGTGGAAGAGTTTCTCAAGCGAGTGGAAGCGGGATTGAAAAGGGAGCTCTACTATTGGAATACTTACTACGTGAGTTTCTCACACGTTTCAGTTTTCTTTTATACGAATTATTATTAA 2028 40.73 MMESSMRASRVSKTHTSKPWKPRQSGYEPSDTETEWNESPWNDDNEMNNMVSSGKNSRMESAVQRSITPINLSHRHPAFDFDGSDLGPERTKIMSKSPYKLQRDVSPLPISERRRHVSPYKYHDDENNFDSKTSQKTTHHHRRSVTAPRLRVREDQPGSNYGHTSQRRERPLSPVPRTILQHPRAASHKMSSSVGELNEMIANVNISKGFPYDDPILHSTESISPGNIFFSQDQTLKNNMTKSYPGQKPEIISQRDSSSSSHQQARTYGKFDQNGRGISSGIGLSTTISTSAVSRQSSSKVSTGNSKMSDSSVTTTASMRKFTENRRKSQSETWFGCIRKGPCRTSKSPEKRAFDEASFIEKAFVVENLRQFWADKYRPSSLNGFICHNLQTQFLRDIVSYDIRPHILFKGPPGSGKKALIMAFLREVFGDASWNVSHDLRYFQIQERTAMQIVIPITSSTHHLEINVSLEPNAKYALMGLVKKISSEYDLPPEASNVNLKANYKVMVLHGVEKADENIQHLIKWIMDCHSDTCKLILCCEDDIGILESVKNRCQVVEVNAPGAKQIIEVLLHIAGKEDFDLPRTFAAKIAANSKSNLRKAIMALEASKAHKLFLIQERIQKLLLEFVHPTLILQKLVEEFLKRVEAGLKRELYYWNTYYVSFSHVSVFFYTNYY 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2248262 2251273 + Bpe002424.2 Bpe10g00121 109243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00121 675 MobiDBLite consensus disorder prediction 109 176 - -
Bpe10g00121 675 MobiDBLite consensus disorder prediction 293 320 - -
Bpe10g00121 675 Gene3D - 564 619 - -
Bpe10g00121 675 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 189 663 - -
Bpe10g00121 675 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 623 IPR027417 -
Bpe10g00121 675 MobiDBLite consensus disorder prediction 1 53 - -
Bpe10g00121 675 Gene3D - 370 562 IPR027417 -
Bpe10g00121 675 PANTHER OS02G0704966 PROTEIN 189 663 - -
Bpe10g00121 675 CDD AAA 393 429 - -
Bpe10g00121 675 MobiDBLite consensus disorder prediction 109 135 - -
Bpe10g00121 675 MobiDBLite consensus disorder prediction 293 327 - -
Bpe10g00121 675 MobiDBLite consensus disorder prediction 238 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00121 K10756 RFC3_5; replication factor C subunit 3/5 - tcc:18610901 677.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00121 Bpe-Chr10:2248262 Bpe13g00897 Bpe-Chr13:15027056 2.39E-29 dispersed
Bpe10g00121 Bpe-Chr10:2248262 Bpe02g00056 Bpe-Chr2:436432 4.11E-49 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00121 Bpe_Chr10 FPKM 6.883814 7.470159 8.370538 8.964989 9.725715 10.25307 11.365759 12.941609 11.734483 12.798515