Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00123 ATGGAACTCGCTCTCCAAACACCTGCTACTCTTCACCGAGATATTTTCCCTTCCGATTTCTTCTTCCAACCACCTCTCGCCTCCTTCCATTTCCACTGTAAGAGCACTATTCTTCGTTTCGGCCGAGATACTCATTTTCGATTCCTCAAGAACACCGGACGAAGAACAGGAAGCCTTGCATTTTCCCAGAAAGTACGCCTCCCTGTTTATGTTAGCGACTTGGAGTATGTGAAAGACGAGGAAGAAGATGTCAGCTCTTCGTATTCAGAGGACGAACGACCTGTCTTATCTCTGAGCGAGAAGCCTGACAGAAACTTGGCTTTGCTTGACGACTACGAGGCAGAGGAGCTCAACTACGATGCCGGCCCCAATCACCGGAGCGGATATATCGCGTTGCTTGGGAAGCCGAATGTGGGGAAAAGCACACTCACTAATCAAATGATTGGTCAGAAGTTGTCAATTGTAACAGATAAACCTCAGACTACGAGGCATCGAGTTCTTGGTATATGTTCGGGTCCAGACTATCAGATGATACTTTATGACACACCTGGTGTAATTGAGAAGAAATTGCACAAGTTGGATTCTATGATGATGAAAAATGTTCGCAGTGCTGCCATTAATGCAGATTGTGTACTTATTCTTGTTGATGCATGTAAATTGCCCGAGAAAATTGATGAGGTCTTGGAAGAAGGTGTAGGGGACCTTCAAGAAAAACCACCAACTTTGCTGGTTTTGAATAAGAAAGATCTAATCAAACCTGGTGAAATTGCGAAGAAGCTGGAGTGGTATGAGAAATTTACGGATGTCGATGAGGTAATACCTGTAAGTGCTAAATATGGGCATGGTGTAGAGGATGTGAAGGATTGGATTCTTTCAAAAATTCCACTCGGGCCAGCTTATTATCCTAAGGATTTTGTTAGTGAGCATCCAGAAAGATTCTTTGTGTCTGAAATTGTCAGAGAGAAGATTTTTATGCAATATCGAAATGAAGTTCCTTATGCATGTCAGGTGAACGTGGTGAGCTATAAAACAAGACCAACTGCTAAAGATTTTATACAAGTTGAAGTTGTTGTTGAGAAAAACTCTCAGAAGATCATCCTCATTGGGAAAGAAGGAAAAGCTTTAAAACTTCTTGCAACAGCTGCTCGACTCGACATAGAAGATTTTTTACAGAAGAAAGTTTATCTGGAGGTGGAAGTTAAAGTAAAAGAAAACTGGAGACAAAATGAAGGGCTTCTAAAGGACTACGGGTATGGAGGACAAAGTCGTGTAATATGA 1278 42.02 MELALQTPATLHRDIFPSDFFFQPPLASFHFHCKSTILRFGRDTHFRFLKNTGRRTGSLAFSQKVRLPVYVSDLEYVKDEEEDVSSSYSEDERPVLSLSEKPDRNLALLDDYEAEELNYDAGPNHRSGYIALLGKPNVGKSTLTNQMIGQKLSIVTDKPQTTRHRVLGICSGPDYQMILYDTPGVIEKKLHKLDSMMMKNVRSAAINADCVLILVDACKLPEKIDEVLEEGVGDLQEKPPTLLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDVKDWILSKIPLGPAYYPKDFVSEHPERFFVSEIVREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEVVVEKNSQKIILIGKEGKALKLLATAARLDIEDFLQKKVYLEVEVKVKENWRQNEGLLKDYGYGGQSRVI 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2309032 2312296 + Bpe002426.1 Bpe10g00123 109245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00123 425 ProSiteProfiles Type-2 KH domain profile. 327 404 IPR004044 GO:0003723
Bpe10g00123 425 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 303 418 IPR009019 GO:0003723
Bpe10g00123 425 PANTHER GTPASE ERA-LIKE, CHLOROPLASTIC 86 419 - -
Bpe10g00123 425 Hamap GTPase Era [era]. 125 418 IPR005662 GO:0003723|GO:0005525
Bpe10g00123 425 Gene3D - 308 421 IPR015946 -
Bpe10g00123 425 TIGRFAM small_GTP: small GTP-binding protein domain 130 289 IPR005225 GO:0005525
Bpe10g00123 425 CDD Era 125 293 IPR030388 GO:0005525
Bpe10g00123 425 TIGRFAM era: GTP-binding protein Era 128 401 IPR005662 GO:0003723|GO:0005525
Bpe10g00123 425 Pfam 50S ribosome-binding GTPase 130 247 IPR006073 GO:0005525
Bpe10g00123 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 328 IPR027417 -
Bpe10g00123 425 Gene3D - 123 307 IPR027417 -
Bpe10g00123 425 Pfam KH domain 330 407 IPR004044 GO:0003723
Bpe10g00123 425 PANTHER GTPASE ERA 86 419 IPR005662 GO:0003723|GO:0005525
Bpe10g00123 425 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 126 296 IPR030388 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00123 K03595 era, ERAL1; GTPase - csv:101204144 590.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00429 Bpe-Chr8:2666199 Bpe10g00123 Bpe-Chr10:2309032 7.08E-26 dispersed
Bpe10g00123 Bpe-Chr10:2309032 Bpe14g00357 Bpe-Chr14:3410916 1.10E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1003 . . . Bda10g00141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0771 . . . . Chy07g01293 . . . . . Bpe10g00123 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00550 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010370 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00123 Bpe_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0