Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00142 ATGGGCCGTGGGAAAATCGAAATCAAGAGGATCGAAAACGCTACGAACAAGCAGGTCACCTACTCGAAAAGAAGAAATGGTCTTTTAAAGAAAGCCAAAGAACTTTCTGTTCTTTGCGATGCAAAGGTTTCCATTATCATGTTCTCTAATACTGGCAAGTTTCATGAGTATACGAGCCCTAACACATCAACGAAGAAGATCTATGATCAGTATCAGCGAACTTTGGGGATTGATCTGTGGAGCTCGCACTATAAGAGAATGGAAGAAAACTTGAGGAAACTGAAGGAAATCAACTACAAATTGAGGACAGAGATTAGGCAAAGAATTGGCAAAGATTTACATGATCTAGACTTCAAGCAACTGCATAGTCTCGAGCAGAAGATATCTTCTCCATTGGCAGCCATACGCGCCAGAAAGTACCACGTCATCAACACCCAGACCCAAACGTACAAGAAAAAGGTGAATAACTTGGAGCAAGTACATGGCAATCTCCTTCTCGACTTTGAAGAATATGAGTTAGGATCTATGGTGGAACTGGTGAATGCAGCGACAAATCTGCATGCTTTCTGCCTCCATCATAACCATGAAGAAGGATTCACATCCCCTGATCTTCATCATCTTCGTCTCGCTTGA 633 42.18 MGRGKIEIKRIENATNKQVTYSKRRNGLLKKAKELSVLCDAKVSIIMFSNTGKFHEYTSPNTSTKKIYDQYQRTLGIDLWSSHYKRMEENLRKLKEINYKLRTEIRQRIGKDLHDLDFKQLHSLEQKISSPLAAIRARKYHVINTQTQTYKKKVNNLEQVHGNLLLDFEEYELGSMVELVNAATNLHAFCLHHNHEEGFTSPDLHHLRLA 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2896564 2900591 + Bpe002447.1 Bpe10g00142 109264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00142 210 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe10g00142 210 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Bpe10g00142 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe10g00142 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 - -
Bpe10g00142 210 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bpe10g00142 210 Pfam K-box region 81 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe10g00142 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe10g00142 210 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bpe10g00142 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe10g00142 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe10g00142 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe10g00142 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe10g00142 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe10g00142 210 Coils Coil 77 104 - -
Bpe10g00142 210 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 198 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe06g00030 Bpe10g00142 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00142 Bpe-Chr10:2896564 Bpe15g00567 Bpe-Chr15:16678416 7.46E-38 dispersed
Bpe02g00630 Bpe-Chr2:4110782 Bpe10g00142 Bpe-Chr10:2896564 6.46E-42 transposed
Bpe10g00142 Bpe-Chr10:2896564 Bpe02g00367 Bpe-Chr2:2414262 1.31E-70 wgd
Bpe10g00142 Bpe-Chr10:2896564 Bpe04g00229 Bpe-Chr4:1552256 2.49E-66 wgd
Bpe10g00142 Bpe-Chr10:2896564 Bpe06g00030 Bpe-Chr6:367437 7.15E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21917 PF01486 K-box 2.60E-18 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00142 K09264 - vvi:100233014 285.419