Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00148 ATGGCATCCCATAATCGTAATGCCAGAACGGGAATACCCATTGACGTAGAAGCTAATTCACCATCACATAAGGTGGCGTTGATTACCGGGATAACTGGCCAGGATGGGTCGTATCTGACGGAGTTTCTTCTCGGTAAGGGCTATGAGGTCCACGGGCTCATTCGGAGGTCTTCTAACTTCAATACTCAGCGGATCAATCATGTCTACGTCGATCCTCACAATGCCAAAAATGCTCGAATGAAGCTTCACTATGCCGACCTGGCCGACGCTTCTTCTCTGCGTCGGTGGCTTGACACTATTCTCCCGGACGAGGTTTATAATCTCGCAGCCCAATCCCACGTCGCTGTTTCGTTTGAGATTCCGGACTACACAGCAGACGTCGTCGCCACCGGGGCTCTACGATTGCTCGAGGCAGTTAGATCGCACATCGCTTCGACTGGACGGAATCATATCCGGTACTACCAAGCTGGATCTTCTGAAATGTTCGGATCCACTCTGCCTCCTCAATCAGAAACCACGCCGTTTCATCCTCGATCTCCTTATGCAGTGTCCAAATGTGCTGCGCATTGGTACACAGTGAATTACCGCGAGGCGTATGGGATCTTCGCATGCAATGGAGTGCTGTTCAACCACGAATCCCCTCGGCGGGGGGAGAATTTTGTGACGAGGAAGATCACAAGAGCTGTTGGTCGAATAAAGATGGGACTGCAAAGCAAACTTTTCCTCGGGAATGTCCAGGCGTCAAGGGATTGGGGATTCTCCGGCGACTACGTGGAAGCAATGTGGATGATGCTGCAACAAGATGAACCAGACGATTACGTGGTGGCGACGGAAGAATCGCACACAGTTGAAGAGTTCTTGGAGGTAGCATTTGGGCATGTAGGATTGAATTGGAAGGAGCACGTAGAAATTGACAAAAGGTATTTCCGGCCAGCAGAGGTAGATAATTTGCGGGGCGATGCAAGCAAGGCGAAGAAGGTGCTTGGATGGAAACCCAAAGTTGGATTTGAGCAGCTGGTTAAGATGATGGTGGATGAAGATATTGAGCTGGCCAAGAAGGAAAAGGTACTGATCAATGCTGGCTACATGGACGCTCCCCAGCAACCATGA 1110 50.45 MASHNRNARTGIPIDVEANSPSHKVALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHVYVDPHNAKNARMKLHYADLADASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIASTGRNHIRYYQAGSSEMFGSTLPPQSETTPFHPRSPYAVSKCAAHWYTVNYREAYGIFACNGVLFNHESPRRGENFVTRKITRAVGRIKMGLQSKLFLGNVQASRDWGFSGDYVEAMWMMLQQDEPDDYVVATEESHTVEEFLEVAFGHVGLNWKEHVEIDKRYFRPAEVDNLRGDASKAKKVLGWKPKVGFEQLVKMMVDEDIELAKKEKVLINAGYMDAPQQP 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3375040 3376149 - Bpe002456.1 Bpe10g00148 109270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00148 369 TIGRFAM gmd: GDP-mannose 4,6-dehydratase 24 350 IPR006368 GO:0008446|GO:0019673
Bpe10g00148 369 PANTHER GDP-MANNOSE 4,6 DEHYDRATASE 1-LIKE 18 363 - -
Bpe10g00148 369 Hamap GDP-mannose 4,6-dehydratase [gmd]. 24 353 IPR006368 GO:0008446|GO:0019673
Bpe10g00148 369 CDD GDP_MD_SDR_e 25 349 - -
Bpe10g00148 369 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 349 IPR036291 -
Bpe10g00148 369 Gene3D - 27 333 - -
Bpe10g00148 369 Pfam GDP-mannose 4,6 dehydratase 27 343 IPR016040 -
Bpe10g00148 369 Gene3D - 217 343 - -
Bpe10g00148 369 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 18 363 IPR006368 GO:0008446|GO:0019673
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00148 K01711 gmd, GMDS; GDPmannose 4,6-dehydratase [EC:4.2.1.47] - jre:109019459 672.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00148 Bpe13g00422 CCT
Bpe10g00148 Bpe15g00467 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00148 Bpe-Chr10:3375040 Bpe15g00467 Bpe-Chr15:16049876 0 dispersed
Bpe10g00148 Bpe-Chr10:3375040 Bpe13g00422 Bpe-Chr13:11851705 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1094 Blo04g00890 Blo16g00075 . . Bpe15g00467 Bpe13g00422 . Bma15g00952 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1676 Cone9ag1597 . . . . . . Bda11g01842 . Bpe10g00148 . Bma03g00966 Bma06g00102 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004288 3 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00148 Bpe_Chr10 FPKM 0.0 0.0 0.182957 0.087066 0.0 0.0 0.087083 1.910915 1.841366 1.779468