Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g00151 TTTTCCATGGCTGACAGCGAAATCAAACCCGACGATTCCCTTCCTGCTTCGTACCAACCCTCTGAACTAAAAATCGCCTCGGAGTTTCTTACCACTTGGCTTCCCTTCCTTTCTAAAGATCTCTGCCATGATTGCTCCCGGCGTCTCTCAGATCGTGTCCGATCCATCGGCATAGAACACATGGGTGACGAACCTTCAGATGAGAAATTCAAAACGCATGAGAAAAAAGGTAGTGAGCATGATAATTGTGATTCAAAATCTCTCGGAAGTGATGAGGCTGAAACAAATTCATTAGGAAGTTGGAAAGATGAGGCAAATGAAAAATATGAAACTCCACCCGAAAAATCTGAAAAATCAGGAGCCTCGCCAGCCGAATTAGTGTTTGAGTCACGTTGCACTGCAACCTCAGGATCTCGAATGTCTTGGGCTGACATGGCCCAGGAAGACGAGTTAGAAGAAGAGGAAGAAGAATGTGCATCAACTAGACGAGTTGTTGATGTTAATTCCTCATCAGGAAAGTTGACAGTTTCAAAAGTTGTTGAAAAACCAACGCTCCCTAGGGAGCAACGAGAGTATATCCGATTTATGAACGTTGGGAGAAAAAAAGATTTCATATGTTTGGAACGGGTTAAAGGAAAAATTGTTAACATTCTTGAAGGACTGGAGCTTCACACAGGAGTGTTCAGTGCTGCAGAGCAGAAAAGGATAGTTGATTATGTCCATTTACTTCAGGAGATGGGGAAAAAGGGGGAATTGAGAGAACGTACTTTTTCGGCTCCTAGAAAGTGGATGAAGGGCAAGGGACGGGTAACGATCCAATTTGGATGCTGTTACAATTATGCAACCGATAAAAATGGCAATCCGCCGGGTATTCTTCAGAATGAAAATGTGGATCCAATTCCCTATCTTTTTAAAGTTATAATTAGGAGGCTGGTTACATGGCATGTGCTTCCTCCATCATGTGTGCCCGATAGTTGCATTGTCAACATCTATGATGAAGGAGACTGTATCCCTCCTCATATCGACAACCATGATTTTGTACGGCCGTTTTGCACTGTATCATTCCTTAGTGAATGTGATATTATCTTCGGATCTAACCTCGAGATTATTGGCCCTGGTGAATTTTCCGGCCCAGCTACGATTCCTCTGCCTATTGGAATATCAATCACATTTAGAAGAATGGATGAATCCAAACGGCCTGCTGGATTTGTTCCAGAACAGGATCTGCAGGGAATTGAGCCATTACCTTACAATACAGGCAAAATACATGGATTAAACTCTCCTAGATCTGAGAATGATGTGAAGAGACAGTCATTATTGGGGAGGGGCGATAATCTAAATACAAGAAGATATGGGGAGAGGTATGACACTCGATCAGAGCCACGTGATTCAGCTCGAGCTCGATACTGGCCAGTCAATAGGAGGAGGACGAGGGTGAACTCTGATAACTGA 1452 43.39 FSMADSEIKPDDSLPASYQPSELKIASEFLTTWLPFLSKDLCHDCSRRLSDRVRSIGIEHMGDEPSDEKFKTHEKKGSEHDNCDSKSLGSDEAETNSLGSWKDEANEKYETPPEKSEKSGASPAELVFESRCTATSGSRMSWADMAQEDELEEEEEECASTRRVVDVNSSSGKLTVSKVVEKPTLPREQREYIRFMNVGRKKDFICLERVKGKIVNILEGLELHTGVFSAAEQKRIVDYVHLLQEMGKKGELRERTFSAPRKWMKGKGRVTIQFGCCYNYATDKNGNPPGILQNENVDPIPYLFKVIIRRLVTWHVLPPSCVPDSCIVNIYDEGDCIPPHIDNHDFVRPFCTVSFLSECDIIFGSNLEIIGPGEFSGPATIPLPIGISITFRRMDESKRPAGFVPEQDLQGIEPLPYNTGKIHGLNSPRSENDVKRQSLLGRGDNLNTRRYGERYDTRSEPRDSARARYWPVNRRRTRVNSDN 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3560133 3562975 + Bpe002460.1 Bpe10g00151 109273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g00151 483 MobiDBLite consensus disorder prediction 59 88 - -
Bpe10g00151 483 MobiDBLite consensus disorder prediction 59 125 - -
Bpe10g00151 483 MobiDBLite consensus disorder prediction 97 115 - -
Bpe10g00151 483 PANTHER RNA DEMETHYLASE ALKBH9B 7 386 - -
Bpe10g00151 483 PANTHER RNA DEMETHYLASE ALKBH9B 387 476 - -
Bpe10g00151 483 MobiDBLite consensus disorder prediction 415 468 - -
Bpe10g00151 483 Gene3D - 205 399 IPR037151 -
Bpe10g00151 483 MobiDBLite consensus disorder prediction 447 468 - -
Bpe10g00151 483 SUPERFAMILY Clavaminate synthase-like 217 366 - -
Bpe10g00151 483 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 7 386 IPR044842 GO:0003729|GO:0006402|GO:0032451
Bpe10g00151 483 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 387 476 IPR044842 GO:0003729|GO:0006402|GO:0032451
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g00151 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] - csv:101203292 591.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00151 Bpe-Chr10:3560133 Bpe10g01011 Bpe-Chr10:15537324 5.23E-22 dispersed
Bpe10g00151 Bpe-Chr10:3560133 Bpe03g00429 Bpe-Chr3:22982948 4.88E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1105 . . . Bda10g00181 . . . . . . Cma03g00691 . Car03g00636 Car07g00380 Sed14g1184 Cpe19g00854 Cpe10g00658 Bhi03g00874 Tan03g2066 Cmetu06g2758 . Hepe04g1586 . . . . . . . . . . . . Cone9ag1602 Lsi01g00607 . . Cme08g00920 . . . . Bpe10g00151 . . . . Cmo03g00717 Cmo07g00430 . . . . . . . . . . . . . . . . . . . . . Csa06g03318 Chy02g00580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003475 1 1 1 0 1 2 2 2 2 1 2 2 1 2 1 2 2 3 2 1 1 1 1 2 2 1 2 3 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g00151 Bpe_Chr10 FPKM 42.660393 45.311321 42.029934 40.644684 27.682629 28.86195 28.695528 42.061523 40.636677 41.479053